Detailed information NTG0997377

Bioinformatically predicted

Overview

• Name: ysxA/radC
• Type: Machinery gene
• Locus tag: ELZ60_RS06300
• Genome accession: NZ_LR134090
• Coordinates: 1249570..1250256 (+)
• Length: 228 a.a.
• NCBI ID: WP_000692876.1
• Uniprot ID: -
• Organism: Staphylococcus aureus strain NCTC9555
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1244570..1255256

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ELZ60_RS06280 (NCTC9555_01184)	-	1244690..1247320 (+)	2631	WP_000425345.1	valine--tRNA ligase	-
ELZ60_RS06285 (NCTC9555_01185)	-	1247333..1248604 (+)	1272	WP_001108337.1	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	-
ELZ60_RS06295 (NCTC9555_01186)	-	1248866..1249573 (+)	708	WP_065315716.1	prepilin peptidase	-
ELZ60_RS06300 (NCTC9555_01187)	ysxA/radC	1249570..1250256 (+)	687	WP_000692876.1	RadC family protein	Machinery gene
ELZ60_RS06305 (NCTC9555_01188)	-	1250324..1250608 (+)	285	WP_000171859.1	hypothetical protein	-
ELZ60_RS06310	-	1250725..1250922 (-)	198	WP_000025835.1	hypothetical protein	-
ELZ60_RS06315 (NCTC9555_01189)	-	1251082..1251555 (+)	474	WP_001236737.1	DUF4930 family protein	-
ELZ60_RS06320	-	1251629..1251748 (+)	120	WP_000840603.1	hypothetical protein	-
ELZ60_RS06325 (NCTC9555_01190)	mreC	1251947..1252789 (+)	843	WP_126509041.1	rod shape-determining protein MreC	-
ELZ60_RS06330 (NCTC9555_01191)	mreD	1252789..1253319 (+)	531	WP_001259925.1	rod shape-determining protein MreD	-
ELZ60_RS06335 (NCTC9555_01192)	rplU	1253738..1254046 (+)	309	WP_000457386.1	50S ribosomal protein L21	-
ELZ60_RS06340 (NCTC9555_01193)	-	1254052..1254372 (+)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
ELZ60_RS06345 (NCTC9555_01194)	rpmA	1254384..1254668 (+)	285	WP_000916187.1	50S ribosomal protein L27	-

Sequence

Protein

• Length: 228 a.a.
• Molecular weight: 25297.21 Da
• Isoelectric Point: 6.7572

>NTDB_id=997377 ELZ60_RS06300 WP_000692876.1 1249570..1250256(+) (ysxA/radC) [Staphylococcus aureus strain NCTC9555]
MKIKEMVTSEMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLIQVKGIGLQKAI
TLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILLLNSKNVVIKESCVFKGTLNSSIVHPREIFSI
AVRENANAIIAVHNHPSGDVTPSQEDIITTMRLKECGLILGIDLLDHIIIGDNRFTSLVEAGYFDEND

Nucleotide

• Length: 687 bp

>NTDB_id=997377 ELZ60_RS06300 WP_000692876.1 1249570..1250256(+) (ysxA/radC) [Staphylococcus aureus strain NCTC9555]
TTGAAAATTAAAGAAATGGTAACTTCAGAAATGCCAAGAGAACGTTTGTTAAGCCATGGTGCAAAAAGTCTTTCGAATAC
AGAATTATTAGCTATATTAATTAACACCGGAAGAAAAGGATTCTCGAGTATAGACATTAGTAATGAACTGCTTAAATCTG
CTTCGAATCTGAATGAATTGAAAAAATCTTCAATTAACGATTTGATACAAGTTAAAGGGATTGGATTACAAAAAGCAATT
ACATTAAAAGCAGCATTTGAGTTAGGGGAAAGGATGGGGAGAAGAGCTGAAAATAATCGTATAAAAATAACGCAACCAAG
TGATGTTGCTGATTATATGATTCCAACAATGAAAGATTTAACACAAGAACATTTTGTCATTTTATTGTTAAATTCAAAAA
ATGTAGTGATTAAAGAAAGCTGTGTTTTTAAAGGTACATTAAATAGTTCAATTGTACATCCACGCGAAATTTTTAGTATT
GCGGTGAGAGAAAATGCCAATGCAATCATCGCAGTTCATAATCATCCATCCGGTGATGTAACGCCCTCACAAGAAGATAT
CATAACAACAATGAGGTTGAAGGAGTGTGGTTTGATTTTAGGGATAGATTTATTAGATCATATTATAATCGGTGATAATA
GATTTACGAGTCTTGTAGAAGCGGGTTACTTTGATGAAAATGATTGA

Domains

Predicted by InterProScan.

• RadC-like JAB domain (RadC) (103-222)

• UPF0758 N-terminal (UPF0758_N) (3-80)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	52.679	98.246	0.518
radC	Streptococcus pneumoniae TIGR4	41.038	92.982	0.382
radC	Streptococcus gordonii str. Challis substr. CH1	39.908	95.614	0.382
radC	Streptococcus pneumoniae R6	40.566	92.982	0.377
radC	Streptococcus pneumoniae D39	40.566	92.982	0.377