Detailed information    

insolico Bioinformatically predicted

Overview


Name   comE/blpR   Type   Regulator
Locus tag   ABC811_RS07740 Genome accession   NZ_CP155535
Coordinates   1495153..1495890 (-) Length   245 a.a.
NCBI ID   WP_001219141.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PJ755/1     
Function   activate transcription of early competence genes; regulation of comX expression (predicted from homology)   
Competence regulation

Genomic Context


Location: 1490153..1500890
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABC811_RS07720 (ABC811_07715) comA/nlmT 1490681..1492171 (+) 1491 WP_001818755.1 peptide cleavage/export ABC transporter Regulator
  ABC811_RS07725 (ABC811_07720) - 1492182..1493543 (+) 1362 WP_001069071.1 bacteriocin secretion accessory protein -
  ABC811_RS07730 (ABC811_07725) blpC 1493600..1493755 (+) 156 WP_000358811.1 quorum-sensing system pheromone BlpC -
  ABC811_RS07735 (ABC811_07730) - 1493799..1495139 (-) 1341 WP_001099892.1 sensor histidine kinase -
  ABC811_RS07740 (ABC811_07735) comE/blpR 1495153..1495890 (-) 738 WP_001219141.1 response regulator transcription factor Regulator
  ABC811_RS07745 (ABC811_07740) - 1495895..1496233 (-) 339 WP_000682133.1 LytTR family DNA-binding domain-containing protein -
  ABC811_RS07750 (ABC811_07745) - 1496510..1496839 (+) 330 WP_000132572.1 hypothetical protein -
  ABC811_RS07755 (ABC811_07750) - 1497007..1498056 (-) 1050 WP_000653751.1 ABC transporter permease -
  ABC811_RS07760 (ABC811_07755) pptA 1498053..1498784 (-) 732 WP_000889923.1 ABC transporter ATP-binding protein Regulator
  ABC811_RS07765 (ABC811_07760) - 1498852..1499262 (+) 411 WP_001278304.1 HIT family protein -
  ABC811_RS07770 (ABC811_07765) - 1499272..1499559 (+) 288 WP_000777753.1 hypothetical protein -
  ABC811_RS07775 (ABC811_07770) - 1499721..1499960 (+) 240 WP_001813906.1 hypothetical protein -

Sequence


Protein


Download         Length: 245 a.a.        Molecular weight: 28752.87 Da        Isoelectric Point: 6.2366

>NTDB_id=997332 ABC811_RS07740 WP_001219141.1 1495153..1495890(-) (comE/blpR) [Streptococcus pneumoniae strain PJ755/1]
MRIFVLEDDFSQQTRIETTIEKLLKEHHITPSSFEVFGKPDQLLAEVHEKGAHQLFFLDIEIRNEEMKGLEVARKIRDRD
PYALIVFVTTHSEFMPLSFRYQVSALDYIDKALSAEEFESRIETALLYANGQDSKSLAEDCFYFKSKFAQFQYPFKEVYY
LETSTRPHRVILYTKTDRLEFTASLEEVLKQEPRLLQCHRSFLINPANVVHLDKKEKLLFFPNGGSCLIARYKVREVSEA
INNLH

Nucleotide


Download         Length: 738 bp        

>NTDB_id=997332 ABC811_RS07740 WP_001219141.1 1495153..1495890(-) (comE/blpR) [Streptococcus pneumoniae strain PJ755/1]
ATGAGAATATTTGTTTTAGAGGATGATTTTTCCCAACAGACTAGGATTGAAACGACGATTGAGAAACTCTTGAAGGAACA
TCATATCACTCCCAGCTCTTTTGAGGTATTTGGCAAGCCAGACCAACTGCTGGCAGAGGTGCATGAGAAGGGGGCCCATC
AGCTATTCTTTTTGGATATTGAGATTCGAAATGAGGAGATGAAGGGTCTGGAAGTGGCTAGAAAGATTCGGGATCGGGAT
CCGTATGCCCTGATTGTCTTTGTGACGACTCACTCGGAGTTTATGCCCCTGTCCTTTCGCTACCAAGTGTCTGCTCTGGA
CTATATTGATAAGGCCCTTTCGGCAGAGGAGTTTGAATCTCGTATCGAGACAGCCCTCCTCTATGCCAATGGTCAAGACA
GTAAAAGTCTAGCGGAAGATTGCTTTTACTTTAAATCAAAATTTGCTCAATTCCAGTATCCTTTTAAAGAGGTTTACTAT
CTCGAAACGTCCACAAGACCCCATCGTGTTATTCTCTATACCAAGACAGACAGGCTGGAATTTACAGCGAGTCTAGAGGA
GGTTCTCAAGCAGGAGCCTCGTCTCTTGCAGTGCCATCGCTCTTTTCTCATCAATCCTGCCAATGTGGTGCATTTAGATA
AGAAAGAAAAACTGCTTTTCTTTCCCAATGGTGGAAGTTGTCTAATCGCGCGTTATAAGGTCAGGGAAGTGTCTGAGGCT
ATTAATAACTTACACTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE/blpR Streptococcus mutans UA159

53.441

100

0.539

  comE/comE1 Streptococcus equinus JB1

43.038

96.735

0.416

  comE/comE2 Streptococcus equinus JB1

38.43

98.776

0.38


Multiple sequence alignment