Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   GZL_RS33075 Genome accession   NZ_CP003987
Coordinates   7733535..7734623 (+) Length   362 a.a.
NCBI ID   WP_039637997.1    Uniprot ID   A0ABY8AF74
Organism   Streptomyces sp. 769     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 7728535..7739623
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GZL_RS33045 (GZL_07171) - 7729118..7729663 (+) 546 WP_039637992.1 membrane protein -
  GZL_RS33050 (GZL_07172) pdxS 7729821..7730732 (+) 912 WP_018539801.1 pyridoxal 5'-phosphate synthase lyase subunit PdxS -
  GZL_RS33055 (GZL_07173) pdxT 7730747..7731340 (+) 594 WP_039637993.1 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT -
  GZL_RS33060 (GZL_07174) - 7731404..7732156 (+) 753 WP_039637994.1 YebC/PmpR family DNA-binding transcriptional regulator -
  GZL_RS33065 (GZL_07175) ruvC 7732290..7732841 (+) 552 WP_039637995.1 crossover junction endodeoxyribonuclease RuvC -
  GZL_RS33070 (GZL_07176) ruvA 7732838..7733458 (+) 621 WP_039637996.1 Holliday junction branch migration protein RuvA -
  GZL_RS33075 (GZL_07177) ruvB 7733535..7734623 (+) 1089 WP_039637997.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  GZL_RS33080 (GZL_07178) yajC 7734787..7735326 (+) 540 WP_039637998.1 preprotein translocase subunit YajC -
  GZL_RS33085 (GZL_07179) secD 7735481..7737235 (+) 1755 WP_039637999.1 protein translocase subunit SecD -
  GZL_RS33090 (GZL_07180) secF 7737237..7738361 (+) 1125 WP_039638000.1 protein translocase subunit SecF -
  GZL_RS33095 (GZL_07181) - 7738358..7738906 (+) 549 WP_039638001.1 adenine phosphoribosyltransferase -

Sequence

Protein


Download         Length: 362 a.a.        Molecular weight: 38292.70 Da        Isoelectric Point: 4.7554

>NTDB_id=99727 GZL_RS33075 WP_039637997.1 7733535..7734623(+) (ruvB) [Streptomyces sp. 769]
MNWDDTAPSTAEESAGAPADRLVAADADGEENAVEAALRPKDLDEFVGQERVREQLDLVLKAALARGATADHVLLSGAPG
LGKTTLSMIIAAEMGAPIRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEEMLYMAMEDFRVDVIVGKGPGA
TAIPLELPPFTLVGATTRAGLLPPPLRDRFGFTGHMEFYAPAELQRVIHRSAGLLDVAIEPEGAAEIAGRSRGTPRIANR
LLRRVRDYAQVKADGVITREVAAQALGVYEVDGRGLDRLDRAVLTALLKLFGGGPVGLSTLAVAVGEERETVEEVAEPFL
VREGLLARTPRGRIATPAAWAHLGLVPPQQAGGGGQHGLFEA

Nucleotide


Download         Length: 1089 bp        

>NTDB_id=99727 GZL_RS33075 WP_039637997.1 7733535..7734623(+) (ruvB) [Streptomyces sp. 769]
GTGAACTGGGACGACACCGCACCGTCGACCGCCGAGGAGAGCGCCGGCGCCCCGGCCGACCGGCTGGTGGCGGCCGACGC
CGATGGCGAGGAGAACGCCGTCGAGGCCGCGCTGCGGCCCAAGGACCTGGACGAGTTCGTCGGCCAGGAGCGGGTGCGCG
AGCAGCTCGACCTGGTGCTGAAGGCGGCTCTGGCGCGTGGCGCCACCGCCGACCACGTCCTGCTCTCCGGGGCGCCCGGG
CTCGGCAAGACCACCCTCTCCATGATCATCGCGGCGGAGATGGGCGCCCCGATCCGGATCACCTCCGGCCCCGCCATCCA
GCACGCCGGCGACCTGGCGGCGATCCTCTCCTCCCTCCAGGAGGGCGAGGTGCTCTTCCTCGACGAGATCCACCGGATGT
CCCGGCCCGCCGAGGAGATGCTCTACATGGCGATGGAGGACTTCCGGGTCGACGTGATCGTCGGCAAGGGGCCGGGCGCC
ACCGCCATCCCGCTGGAGCTCCCGCCGTTCACGCTGGTCGGGGCGACGACCCGGGCGGGGCTGCTGCCGCCGCCGCTGCG
CGACCGGTTCGGCTTCACCGGCCACATGGAGTTCTACGCCCCGGCCGAGCTCCAGCGCGTCATCCACCGCTCCGCTGGCC
TGCTGGACGTGGCGATAGAGCCCGAGGGCGCCGCCGAGATCGCCGGCCGCTCCCGCGGCACGCCCCGGATCGCCAACCGC
CTGCTGCGCCGGGTCCGCGACTACGCCCAGGTCAAGGCCGACGGCGTGATCACCCGCGAGGTCGCGGCGCAGGCCCTGGG
GGTCTACGAGGTCGACGGCCGCGGGCTGGACCGGCTCGACCGGGCGGTGCTCACCGCCCTGCTCAAGCTGTTCGGCGGCG
GCCCGGTCGGGCTGTCCACCCTCGCGGTCGCGGTGGGGGAGGAGCGCGAGACGGTCGAGGAGGTCGCCGAGCCCTTCCTG
GTGCGCGAGGGGCTGCTGGCCCGTACGCCGCGCGGCCGGATCGCGACCCCGGCGGCCTGGGCCCACCTCGGGCTGGTGCC
GCCGCAGCAGGCGGGCGGCGGCGGACAGCACGGCCTGTTCGAGGCATGA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(38-196)

RuvB C-terminal winged helix domain (WHD_RuvB)

(274-343)

RuvB AAA lid domain (AAA_lid_4)

(199-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

53.333

91.16

0.486
  ruvB Synechocystis sp. PCC 6803

54.459

86.74

0.472
  ruvB Streptococcus pneumoniae TIGR4

52.16

89.503

0.467
  ruvB Streptococcus pneumoniae R6

52.16

89.503

0.467
  ruvB Streptococcus pneumoniae D39

52.16

89.503

0.467
  ruvB Helicobacter pylori 26695

50.314

87.845

0.442

Multiple sequence alignment