Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | AAH687_RS04530 | Genome accession | NZ_CP155530 |
| Coordinates | 912307..912849 (+) | Length | 180 a.a. |
| NCBI ID | WP_007497456.1 | Uniprot ID | A0A5K1N7D0 |
| Organism | Bacillus altitudinis strain TN5S8 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 864514..914295 | 912307..912849 | within | 0 |
Gene organization within MGE regions
Location: 864514..914295
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AAH687_RS04300 (AAH687_04300) | dnaX | 864514..866226 (-) | 1713 | WP_346395414.1 | DNA polymerase III subunit gamma/tau | - |
| AAH687_RS04310 (AAH687_04310) | tadA | 866898..867374 (-) | 477 | WP_008342015.1 | tRNA adenosine(34) deaminase TadA | - |
| AAH687_RS04315 (AAH687_04315) | - | 867454..868008 (+) | 555 | WP_008342017.1 | isochorismatase family cysteine hydrolase | - |
| AAH687_RS04320 (AAH687_04320) | - | 868054..869355 (+) | 1302 | WP_008342019.1 | glycoside hydrolase family 18 protein | - |
| AAH687_RS04325 (AAH687_04325) | - | 869435..870058 (+) | 624 | WP_008342021.1 | deoxynucleoside kinase | - |
| AAH687_RS04330 (AAH687_04330) | - | 870055..870714 (+) | 660 | WP_008342023.1 | deoxynucleoside kinase | - |
| AAH687_RS04340 (AAH687_04340) | - | 871183..872010 (-) | 828 | WP_008342025.1 | methyl-accepting chemotaxis protein | - |
| AAH687_RS04345 (AAH687_04345) | serS | 872112..873386 (-) | 1275 | WP_008342028.1 | serine--tRNA ligase | - |
| AAH687_RS04350 (AAH687_04350) | pdxT | 873704..874294 (-) | 591 | WP_008342030.1 | pyridoxal 5'-phosphate synthase glutaminase subunit PdxT | - |
| AAH687_RS04355 (AAH687_04355) | pdxS | 874315..875199 (-) | 885 | WP_008342033.1 | pyridoxal 5'-phosphate synthase lyase subunit PdxS | - |
| AAH687_RS04360 (AAH687_04360) | - | 875446..876924 (+) | 1479 | WP_346395420.1 | PLP-dependent aminotransferase family protein | - |
| AAH687_RS04365 (AAH687_04365) | - | 876967..878292 (-) | 1326 | WP_008342036.1 | D-alanyl-D-alanine carboxypeptidase family protein | - |
| AAH687_RS04370 (AAH687_04370) | guaB | 878453..879919 (-) | 1467 | WP_008342039.1 | IMP dehydrogenase | - |
| AAH687_RS04375 (AAH687_04375) | - | 880041..881009 (+) | 969 | WP_072368517.1 | YaaC family protein | - |
| AAH687_RS04405 (AAH687_04405) | gyrA | 886402..888906 (-) | 2505 | WP_346395423.1 | DNA gyrase subunit A | - |
| AAH687_RS04410 (AAH687_04410) | gyrB | 889140..891056 (-) | 1917 | WP_025206585.1 | DNA topoisomerase (ATP-hydrolyzing) subunit B | - |
| AAH687_RS04415 (AAH687_04415) | - | 891114..891359 (-) | 246 | WP_008360920.1 | extracellular matrix/biofilm biosynthesis regulator RemA family protein | - |
| AAH687_RS04420 (AAH687_04420) | recF | 891377..892489 (-) | 1113 | WP_007497487.1 | DNA replication/repair protein RecF | Machinery gene |
| AAH687_RS04425 (AAH687_04425) | yaaA | 892506..892721 (-) | 216 | WP_008347598.1 | S4 domain-containing protein YaaA | - |
| AAH687_RS04430 (AAH687_04430) | dnaN | 892872..894008 (-) | 1137 | WP_008347596.1 | DNA polymerase III subunit beta | - |
| AAH687_RS04435 (AAH687_04435) | dnaA | 894205..895545 (-) | 1341 | WP_008347594.1 | chromosomal replication initiator protein DnaA | - |
| AAH687_RS04440 (AAH687_04440) | rpmH | 896166..896300 (+) | 135 | WP_008360908.1 | 50S ribosomal protein L34 | - |
| AAH687_RS04445 (AAH687_04445) | rnpA | 896379..896738 (+) | 360 | WP_008347592.1 | ribonuclease P protein component | - |
| AAH687_RS04450 (AAH687_04450) | spoIIIJ | 896897..897679 (+) | 783 | WP_139336409.1 | YidC family membrane integrase SpoIIIJ | - |
| AAH687_RS04455 (AAH687_04455) | jag | 897676..898299 (+) | 624 | WP_076821512.1 | RNA-binding cell elongation regulator Jag/EloR | - |
| AAH687_RS04460 (AAH687_04460) | mnmE | 898702..900081 (+) | 1380 | WP_076821510.1 | tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE | - |
| AAH687_RS04465 (AAH687_04465) | mnmG | 900099..901985 (+) | 1887 | WP_050826819.1 | tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG | - |
| AAH687_RS04470 (AAH687_04470) | rsmG | 901999..902718 (+) | 720 | WP_007497477.1 | 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG | - |
| AAH687_RS04475 (AAH687_04475) | noc | 902824..903699 (+) | 876 | WP_008347579.1 | nucleoid occlusion protein | - |
| AAH687_RS04480 (AAH687_04480) | - | 903828..904661 (+) | 834 | WP_048001990.1 | YiiX/YebB-like N1pC/P60 family cysteine hydrolase | - |
| AAH687_RS04485 (AAH687_04485) | soj | 904898..905659 (+) | 762 | WP_008360890.1 | sporulation initiation inhibitor protein Soj | - |
| AAH687_RS04490 (AAH687_04490) | - | 905652..906506 (+) | 855 | WP_008347572.1 | ParB/RepB/Spo0J family partition protein | - |
| AAH687_RS04495 (AAH687_04495) | yyaC | 906532..907158 (-) | 627 | WP_008347570.1 | spore protease YyaC | - |
| AAH687_RS04500 (AAH687_04500) | - | 907231..908286 (+) | 1056 | WP_079919768.1 | hypothetical protein | - |
| AAH687_RS04505 (AAH687_04505) | - | 908312..908722 (-) | 411 | WP_008347564.1 | hypothetical protein | - |
| AAH687_RS04510 (AAH687_04510) | - | 908738..910057 (-) | 1320 | WP_212357642.1 | hydrolase | - |
| AAH687_RS04515 (AAH687_04515) | - | 910352..910558 (+) | 207 | WP_008347561.1 | DUF951 domain-containing protein | - |
| AAH687_RS04520 (AAH687_04520) | ychF | 910774..911874 (+) | 1101 | WP_007497458.1 | redox-regulated ATPase YchF | - |
| AAH687_RS04525 (AAH687_04525) | rpsF | 911983..912270 (+) | 288 | WP_008347557.1 | 30S ribosomal protein S6 | - |
| AAH687_RS04530 (AAH687_04530) | ssbA | 912307..912849 (+) | 543 | WP_007497456.1 | single-stranded DNA-binding protein SsbA | Machinery gene |
| AAH687_RS04535 (AAH687_04535) | rpsR | 912891..913130 (+) | 240 | WP_008347556.1 | 30S ribosomal protein S18 | - |
| AAH687_RS04540 (AAH687_04540) | - | 913330..914295 (+) | 966 | WP_008347553.1 | ABC transporter ATP-binding protein | - |
Sequence
Protein
Download Length: 180 a.a. Molecular weight: 19605.15 Da Isoelectric Point: 4.6109
>NTDB_id=996936 AAH687_RS04530 WP_007497456.1 912307..912849(+) (ssbA) [Bacillus altitudinis strain TN5S8]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKSGGAGSGGYSGGGNSGGQYYGGSQNDQNPFGNEPSQNPYGNQNNQNRNQGNSFN
DDPFANDGKPIDISDDDLPF
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKSGGAGSGGYSGGGNSGGQYYGGSQNDQNPFGNEPSQNPYGNQNNQNRNQGNSFN
DDPFANDGKPIDISDDDLPF
Nucleotide
Download Length: 543 bp
>NTDB_id=996936 AAH687_RS04530 WP_007497456.1 912307..912849(+) (ssbA) [Bacillus altitudinis strain TN5S8]
ATGCTAAACCGTGTTGTATTGGTCGGAAGACTAACAAAAGACCCTGAGCTTCGCTACACGCCTAATGGTGCGGCTGTAGC
CACGTTTACTCTAGCTGTGAATCGTACGTTTACGAATCAATCTGGAGAGCGTGAAGCCGATTTCATTAACTGTGTTACTT
GGAGAAGACAAGCCGAGAACGTGGCTAATTTCTTGAAAAAAGGAAGTCTTGCCGGTGTAGACGGTCGCTTGCAGACAAGA
AACTATGAAAACCAGCAAGGACAACGTGTCTTCGTGACAGAAGTTCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAAAG
CGGCGGTGCTGGTTCAGGTGGATACAGCGGCGGTGGTAATAGCGGAGGCCAGTATTATGGCGGCAGCCAAAATGATCAGA
ATCCATTTGGAAATGAACCAAGTCAAAATCCATATGGCAATCAAAACAACCAAAATCGTAATCAGGGAAATAGCTTCAAT
GATGACCCATTTGCGAATGATGGTAAACCGATTGACATCTCCGATGATGATTTGCCATTCTAA
ATGCTAAACCGTGTTGTATTGGTCGGAAGACTAACAAAAGACCCTGAGCTTCGCTACACGCCTAATGGTGCGGCTGTAGC
CACGTTTACTCTAGCTGTGAATCGTACGTTTACGAATCAATCTGGAGAGCGTGAAGCCGATTTCATTAACTGTGTTACTT
GGAGAAGACAAGCCGAGAACGTGGCTAATTTCTTGAAAAAAGGAAGTCTTGCCGGTGTAGACGGTCGCTTGCAGACAAGA
AACTATGAAAACCAGCAAGGACAACGTGTCTTCGTGACAGAAGTTCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAAAG
CGGCGGTGCTGGTTCAGGTGGATACAGCGGCGGTGGTAATAGCGGAGGCCAGTATTATGGCGGCAGCCAAAATGATCAGA
ATCCATTTGGAAATGAACCAAGTCAAAATCCATATGGCAATCAAAACAACCAAAATCGTAATCAGGGAAATAGCTTCAAT
GATGACCCATTTGCGAATGATGGTAAACCGATTGACATCTCCGATGATGATTTGCCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
85.556 |
100 |
0.856 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
55.376 |
100 |
0.572 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
64.151 |
58.889 |
0.378 |
| ssb | Glaesserella parasuis strain SC1401 |
35.714 |
100 |
0.361 |