Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   QMM73_RS01640 Genome accession   NZ_AP027135
Coordinates   366427..366930 (+) Length   167 a.a.
NCBI ID   WP_000934799.1    Uniprot ID   A0A7U7IE99
Organism   Staphylococcus aureus strain JP089     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 361427..371930
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMM73_RS01610 (JP089_03080) - 362364..363209 (+) 846 WP_061838576.1 ParB/RepB/Spo0J family partition protein -
  QMM73_RS01615 (JP089_03090) - 363366..364247 (+) 882 WP_001077602.1 mechanosensitive ion channel family protein -
  QMM73_RS01620 (JP089_03100) - 364277..364480 (+) 204 WP_000157345.1 DUF951 domain-containing protein -
  QMM73_RS01625 (JP089_03110) ychF 364492..365589 (+) 1098 WP_001218732.1 redox-regulated ATPase YchF -
  QMM73_RS01630 (JP089_03120) - 365675..365866 (-) 192 WP_001052483.1 hypothetical protein -
  QMM73_RS01635 (JP089_03130) rpsF 366110..366406 (+) 297 WP_001261460.1 30S ribosomal protein S6 -
  QMM73_RS01640 (JP089_03140) ssbA 366427..366930 (+) 504 WP_000934799.1 single-stranded DNA-binding protein Machinery gene
  QMM73_RS01645 (JP089_03150) rpsR 366982..367224 (+) 243 WP_000897044.1 30S ribosomal protein S18 -
  QMM73_RS01650 (JP089_03160) - 367355..368674 (+) 1320 WP_281961793.1 ISL3-like element IS1181 family transposase -
  QMM73_RS01655 - 368677..368748 (+) 72 Protein_328 hypothetical protein -
  QMM73_RS01660 (JP089_03170) - 369009..369908 (-) 900 WP_061838994.1 Abi family protein -
  QMM73_RS01665 - 369998..370686 (-) 689 Protein_330 tyrosine-type recombinase/integrase -
  QMM73_RS01670 (JP089_03200) selX 370892..371503 (+) 612 WP_000475327.1 staphylococcal enterotoxin-like toxin X -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18539.12 Da        Isoelectric Point: 4.7305

>NTDB_id=99628 QMM73_RS01640 WP_000934799.1 366427..366930(+) (ssbA) [Staphylococcus aureus strain JP089]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=99628 QMM73_RS01640 WP_000934799.1 366427..366930(+) (ssbA) [Staphylococcus aureus strain JP089]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.341

100

0.689
  ssb Latilactobacillus sakei subsp. sakei 23K

54.971

100

0.563
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

63.473

0.371
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.365

Multiple sequence alignment