Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | AAFX13_RS22400 | Genome accession | NZ_CP155084 |
| Coordinates | 2999809..3000273 (+) | Length | 154 a.a. |
| NCBI ID | WP_025524817.1 | Uniprot ID | A0A7Z2MTQ1 |
| Organism | Vibrio parahaemolyticus strain TBV028 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 2994809..3005273
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AAFX13_RS22385 (AAFX13_22390) | pdhR | 2996841..2997608 (-) | 768 | WP_005462576.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
| AAFX13_RS22390 (AAFX13_22395) | ampD | 2998014..2998565 (-) | 552 | WP_069533150.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| AAFX13_RS22395 (AAFX13_22400) | nadC | 2998658..2999545 (+) | 888 | WP_069533151.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| AAFX13_RS22400 (AAFX13_22405) | pilA | 2999809..3000273 (+) | 465 | WP_025524817.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| AAFX13_RS22405 (AAFX13_22410) | pilB | 3000280..3001965 (+) | 1686 | WP_069533154.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| AAFX13_RS22410 (AAFX13_22415) | pilC | 3001989..3003212 (+) | 1224 | WP_005479682.1 | type II secretion system F family protein | Machinery gene |
| AAFX13_RS22415 (AAFX13_22420) | pilD | 3003277..3004146 (+) | 870 | WP_025579276.1 | prepilin peptidase | Machinery gene |
| AAFX13_RS22420 (AAFX13_22425) | coaE | 3004147..3004761 (+) | 615 | WP_005480887.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 154 a.a. Molecular weight: 16144.59 Da Isoelectric Point: 8.1135
>NTDB_id=996207 AAFX13_RS22400 WP_025524817.1 2999809..3000273(+) (pilA) [Vibrio parahaemolyticus strain TBV028]
MKHSKQKKQQGFTLIELMIVVAIIGILAAFAVPAYQNYTKKATLAEFPKVAAAMKLAVELCAHENASDATTFKSNCLSGS
NGVPAKITNLNDISIEAVAGSSGVNVIAQAVVVKGPIAAKEQYIMASNYTGSGIEWTSSCKDAGGKAQTDYCPE
MKHSKQKKQQGFTLIELMIVVAIIGILAAFAVPAYQNYTKKATLAEFPKVAAAMKLAVELCAHENASDATTFKSNCLSGS
NGVPAKITNLNDISIEAVAGSSGVNVIAQAVVVKGPIAAKEQYIMASNYTGSGIEWTSSCKDAGGKAQTDYCPE
Nucleotide
Download Length: 465 bp
>NTDB_id=996207 AAFX13_RS22400 WP_025524817.1 2999809..3000273(+) (pilA) [Vibrio parahaemolyticus strain TBV028]
ATGAAACACAGTAAACAGAAAAAACAACAAGGTTTTACCTTGATTGAATTGATGATTGTAGTGGCTATTATCGGTATTTT
GGCTGCATTTGCCGTACCGGCATATCAAAACTATACAAAAAAAGCGACATTAGCGGAATTCCCCAAAGTAGCAGCAGCTA
TGAAATTAGCAGTTGAGTTGTGCGCACACGAAAATGCTTCGGATGCAACGACTTTTAAATCAAACTGTCTTTCCGGTAGT
AATGGGGTGCCTGCAAAGATTACTAACCTAAATGATATATCAATTGAAGCTGTCGCAGGGTCATCAGGTGTAAATGTTAT
TGCACAAGCAGTTGTAGTAAAAGGACCTATCGCAGCTAAAGAACAATACATAATGGCATCAAACTACACAGGAAGTGGCA
TTGAATGGACTAGCTCTTGTAAAGATGCAGGGGGTAAGGCTCAAACTGATTACTGCCCTGAATAA
ATGAAACACAGTAAACAGAAAAAACAACAAGGTTTTACCTTGATTGAATTGATGATTGTAGTGGCTATTATCGGTATTTT
GGCTGCATTTGCCGTACCGGCATATCAAAACTATACAAAAAAAGCGACATTAGCGGAATTCCCCAAAGTAGCAGCAGCTA
TGAAATTAGCAGTTGAGTTGTGCGCACACGAAAATGCTTCGGATGCAACGACTTTTAAATCAAACTGTCTTTCCGGTAGT
AATGGGGTGCCTGCAAAGATTACTAACCTAAATGATATATCAATTGAAGCTGTCGCAGGGTCATCAGGTGTAAATGTTAT
TGCACAAGCAGTTGTAGTAAAAGGACCTATCGCAGCTAAAGAACAATACATAATGGCATCAAACTACACAGGAAGTGGCA
TTGAATGGACTAGCTCTTGTAAAGATGCAGGGGGTAAGGCTCAAACTGATTACTGCCCTGAATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio campbellii strain DS40M4 |
58.71 |
100 |
0.591 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
39.865 |
96.104 |
0.383 |
| pilA | Haemophilus influenzae 86-028NP |
41.429 |
90.909 |
0.377 |