Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | AAFX13_RS22415 | Genome accession | NZ_CP155084 |
| Coordinates | 3003277..3004146 (+) | Length | 289 a.a. |
| NCBI ID | WP_025579276.1 | Uniprot ID | - |
| Organism | Vibrio parahaemolyticus strain TBV028 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2998277..3009146
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AAFX13_RS22395 (AAFX13_22400) | nadC | 2998658..2999545 (+) | 888 | WP_069533151.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| AAFX13_RS22400 (AAFX13_22405) | pilA | 2999809..3000273 (+) | 465 | WP_025524817.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| AAFX13_RS22405 (AAFX13_22410) | pilB | 3000280..3001965 (+) | 1686 | WP_069533154.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| AAFX13_RS22410 (AAFX13_22415) | pilC | 3001989..3003212 (+) | 1224 | WP_005479682.1 | type II secretion system F family protein | Machinery gene |
| AAFX13_RS22415 (AAFX13_22420) | pilD | 3003277..3004146 (+) | 870 | WP_025579276.1 | prepilin peptidase | Machinery gene |
| AAFX13_RS22420 (AAFX13_22425) | coaE | 3004147..3004761 (+) | 615 | WP_005480887.1 | dephospho-CoA kinase | - |
| AAFX13_RS22425 (AAFX13_22430) | zapD | 3004789..3005529 (+) | 741 | WP_023624252.1 | cell division protein ZapD | - |
| AAFX13_RS22430 (AAFX13_22435) | yacG | 3005598..3005792 (+) | 195 | WP_005462546.1 | DNA gyrase inhibitor YacG | - |
| AAFX13_RS22435 (AAFX13_22440) | rplS | 3006102..3006455 (-) | 354 | WP_005462554.1 | 50S ribosomal protein L19 | - |
| AAFX13_RS22440 (AAFX13_22445) | trmD | 3006497..3007240 (-) | 744 | WP_005462562.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| AAFX13_RS22445 (AAFX13_22450) | rimM | 3007268..3007816 (-) | 549 | WP_005462552.1 | ribosome maturation factor RimM | - |
| AAFX13_RS22450 (AAFX13_22455) | rpsP | 3007845..3008093 (-) | 249 | WP_005379962.1 | 30S ribosomal protein S16 | - |
Sequence
Protein
Download Length: 289 a.a. Molecular weight: 32371.43 Da Isoelectric Point: 6.8205
>NTDB_id=996210 AAFX13_RS22415 WP_025579276.1 3003277..3004146(+) (pilD) [Vibrio parahaemolyticus strain TBV028]
MEVLQYYPWLFVVFASIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIQPPQEVLTLSVPRSSCQNCATPIRIR
DNIPVISWLLLKGKCHHCHTAISPRYPLIELLTAACAGFVAYHFGFSYFTVALIFFTFVLIAATFIDLDTMLLPDQLTLP
LTWAGIALALTEISPVSLQDAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLVQLRLQKQGIERAFPFGPYLAIAGWVSLIWGDQILSWYFTSILGV
MEVLQYYPWLFVVFASIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIQPPQEVLTLSVPRSSCQNCATPIRIR
DNIPVISWLLLKGKCHHCHTAISPRYPLIELLTAACAGFVAYHFGFSYFTVALIFFTFVLIAATFIDLDTMLLPDQLTLP
LTWAGIALALTEISPVSLQDAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLVQLRLQKQGIERAFPFGPYLAIAGWVSLIWGDQILSWYFTSILGV
Nucleotide
Download Length: 870 bp
>NTDB_id=996210 AAFX13_RS22415 WP_025579276.1 3003277..3004146(+) (pilD) [Vibrio parahaemolyticus strain TBV028]
ATGGAAGTGTTGCAGTACTACCCTTGGCTATTCGTTGTGTTTGCCAGTATCTTCGGTTTAATTGTGGGTAGTTTTCTTAA
TGTGGTCATTTATCGGCTACCTAAAATCATGGAATTAGAATGGCGCCGTGAATGCGCCGAATCATTCCCTGAATATAAGA
TTCAGCCACCTCAAGAAGTTTTGACATTAAGCGTGCCTCGCTCTTCGTGCCAAAACTGCGCGACGCCAATTCGTATTCGA
GACAATATTCCAGTAATCAGCTGGCTATTGTTAAAAGGAAAATGCCATCATTGTCATACCGCAATAAGTCCTCGCTATCC
GCTGATAGAATTACTCACTGCAGCGTGCGCTGGTTTTGTGGCTTATCATTTCGGCTTTAGCTACTTTACGGTTGCGTTAA
TCTTTTTCACATTTGTCTTAATAGCCGCGACTTTTATCGATCTCGATACTATGCTGCTACCGGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCGTTAGCATTAACAGAAATAAGCCCTGTTAGTCTACAAGACGCCGTAATTGGTGCGATTGC
CGGTTATTTGTGTCTTTGGTCTGTATATTGGGGGTTCAAACTGCTTACTGGTAAAGAAGGCATGGGTTACGGTGATTTTA
AATTGCTGGCTGCCCTTGGCGCTTGGCTAGGATGGCAATCATTACCAATGATCATCCTACTTTCTTCCGTCGTCGGTGTG
ATATTCGGGCTCGTTCAGTTACGACTACAAAAACAAGGTATAGAGAGAGCTTTCCCTTTCGGCCCATATTTAGCGATTGC
AGGATGGGTAAGCTTAATCTGGGGCGACCAAATTCTAAGTTGGTACTTCACGTCAATTTTAGGGGTGTAA
ATGGAAGTGTTGCAGTACTACCCTTGGCTATTCGTTGTGTTTGCCAGTATCTTCGGTTTAATTGTGGGTAGTTTTCTTAA
TGTGGTCATTTATCGGCTACCTAAAATCATGGAATTAGAATGGCGCCGTGAATGCGCCGAATCATTCCCTGAATATAAGA
TTCAGCCACCTCAAGAAGTTTTGACATTAAGCGTGCCTCGCTCTTCGTGCCAAAACTGCGCGACGCCAATTCGTATTCGA
GACAATATTCCAGTAATCAGCTGGCTATTGTTAAAAGGAAAATGCCATCATTGTCATACCGCAATAAGTCCTCGCTATCC
GCTGATAGAATTACTCACTGCAGCGTGCGCTGGTTTTGTGGCTTATCATTTCGGCTTTAGCTACTTTACGGTTGCGTTAA
TCTTTTTCACATTTGTCTTAATAGCCGCGACTTTTATCGATCTCGATACTATGCTGCTACCGGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCGTTAGCATTAACAGAAATAAGCCCTGTTAGTCTACAAGACGCCGTAATTGGTGCGATTGC
CGGTTATTTGTGTCTTTGGTCTGTATATTGGGGGTTCAAACTGCTTACTGGTAAAGAAGGCATGGGTTACGGTGATTTTA
AATTGCTGGCTGCCCTTGGCGCTTGGCTAGGATGGCAATCATTACCAATGATCATCCTACTTTCTTCCGTCGTCGGTGTG
ATATTCGGGCTCGTTCAGTTACGACTACAAAAACAAGGTATAGAGAGAGCTTTCCCTTTCGGCCCATATTTAGCGATTGC
AGGATGGGTAAGCTTAATCTGGGGCGACCAAATTCTAAGTTGGTACTTCACGTCAATTTTAGGGGTGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio campbellii strain DS40M4 |
88.927 |
100 |
0.889 |
| pilD | Vibrio cholerae strain A1552 |
73.264 |
99.654 |
0.73 |
| pilD | Acinetobacter baumannii D1279779 |
52.612 |
92.734 |
0.488 |
| pilD | Acinetobacter nosocomialis M2 |
52.239 |
92.734 |
0.484 |
| pilD | Neisseria gonorrhoeae MS11 |
47.101 |
95.502 |
0.45 |