Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AAGR22_RS02265 Genome accession   NZ_CP155071
Coordinates   520922..521458 (+) Length   178 a.a.
NCBI ID   WP_345830011.1    Uniprot ID   -
Organism   Erwinia sp. HDF1-3R     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 515922..526458
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAGR22_RS02250 (AAGR22_02250) - 516772..517482 (+) 711 WP_345830003.1 DUF2786 domain-containing protein -
  AAGR22_RS02255 (AAGR22_02255) - 517489..519756 (+) 2268 WP_345830005.1 STY4526/YPO1902 family pathogenicity island replication protein -
  AAGR22_RS02260 (AAGR22_02260) - 520391..520861 (+) 471 WP_016807974.1 STY4534 family ICE replication protein -
  AAGR22_RS02265 (AAGR22_02265) ssb 520922..521458 (+) 537 WP_345830011.1 single-stranded DNA-binding protein Machinery gene
  AAGR22_RS02270 (AAGR22_02270) - 521522..521764 (+) 243 WP_016807972.1 DUF4160 domain-containing protein -
  AAGR22_RS02275 (AAGR22_02275) - 521748..521996 (+) 249 WP_345830017.1 DUF2442 domain-containing protein -
  AAGR22_RS02280 (AAGR22_02280) - 522133..522798 (+) 666 WP_345830018.1 PilL N-terminal domain-containing protein -
  AAGR22_RS02285 (AAGR22_02285) - 522795..523547 (+) 753 WP_345830019.1 hypothetical protein -
  AAGR22_RS02290 (AAGR22_02290) - 523559..524182 (+) 624 Protein_429 TIGR03759 family integrating conjugative element protein -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 19164.30 Da        Isoelectric Point: 6.7299

>NTDB_id=996099 AAGR22_RS02265 WP_345830011.1 520922..521458(+) (ssb) [Erwinia sp. HDF1-3R]
MSSRGVNKVILVGNLGQDPEVRYIPNGSAVATLSLATSESWRDKQSGEQKEVTEWHRVVIFGKLAEIAGEYLRKGSQVYI
EGQLRTRKWTDQAGQEKYTTEVVVNIGGTMQMLGGRQSGSGQNTSPRNDWGQPQQPSGPTHSGQASGSSAGAPPMDFDDD
IPFIGFGYGVPKSAIHAL

Nucleotide


Download         Length: 537 bp        

>NTDB_id=996099 AAGR22_RS02265 WP_345830011.1 520922..521458(+) (ssb) [Erwinia sp. HDF1-3R]
ATGTCCTCACGCGGCGTTAACAAGGTGATTCTTGTCGGAAACCTCGGCCAGGATCCTGAAGTGCGTTATATTCCTAACGG
CAGTGCAGTTGCCACCCTTTCTCTGGCCACGTCTGAGAGCTGGCGCGATAAGCAGTCCGGCGAACAGAAAGAAGTGACCG
AATGGCATCGGGTGGTTATTTTCGGCAAGCTGGCAGAAATTGCGGGTGAATATCTGCGCAAAGGCTCCCAGGTTTACATC
GAGGGCCAGCTGCGCACTCGCAAATGGACCGATCAGGCCGGCCAGGAGAAATACACCACAGAGGTGGTGGTCAATATTGG
TGGCACCATGCAGATGCTTGGCGGTCGGCAGTCCGGCAGCGGTCAGAATACGTCTCCCCGGAATGACTGGGGCCAGCCTC
AGCAACCTTCCGGACCGACTCACAGTGGCCAGGCTTCCGGCAGCAGTGCCGGTGCGCCACCGATGGACTTCGATGACGAT
ATACCGTTCATTGGATTCGGGTATGGAGTACCAAAATCGGCAATCCATGCACTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

62.147

99.438

0.618
  ssb Glaesserella parasuis strain SC1401

51.934

100

0.528
  ssb Neisseria meningitidis MC58

44.944

100

0.449
  ssb Neisseria gonorrhoeae MS11

44.382

100

0.444

Multiple sequence alignment