Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AAGR22_RS01945 Genome accession   NZ_CP155071
Coordinates   442372..442926 (+) Length   184 a.a.
NCBI ID   WP_067704468.1    Uniprot ID   -
Organism   Erwinia sp. HDF1-3R     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 437372..447926
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAGR22_RS01930 (AAGR22_01930) - 437599..437931 (+) 333 WP_067704480.1 MmcQ/YjbR family DNA-binding protein -
  AAGR22_RS01935 (AAGR22_01935) - 438009..439061 (-) 1053 WP_067704476.1 NAD(P)-dependent alcohol dehydrogenase -
  AAGR22_RS01940 (AAGR22_01940) uvrA 439236..442067 (-) 2832 WP_067704472.1 excinuclease ABC subunit UvrA -
  AAGR22_RS01945 (AAGR22_01945) ssb 442372..442926 (+) 555 WP_067704468.1 single-stranded DNA-binding protein Machinery gene
  AAGR22_RS01950 (AAGR22_01950) - 443083..444021 (-) 939 WP_345829953.1 aromatic alcohol reductase -
  AAGR22_RS01955 (AAGR22_01955) - 444104..444526 (+) 423 WP_067704686.1 helix-turn-helix domain-containing protein -
  AAGR22_RS01960 (AAGR22_01960) - 444729..445166 (+) 438 WP_345829954.1 DUF3828 domain-containing protein -
  AAGR22_RS01965 (AAGR22_01965) - 445200..446135 (-) 936 WP_345829955.1 VirK/YbjX family protein -
  AAGR22_RS01970 (AAGR22_01970) - 447245..447640 (-) 396 WP_067704458.1 transposase -

Sequence

Protein


Download         Length: 184 a.a.        Molecular weight: 19516.45 Da        Isoelectric Point: 5.2456

>NTDB_id=996098 AAGR22_RS01945 WP_067704468.1 442372..442926(+) (ssb) [Erwinia sp. HDF1-3R]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGETKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWTDQAGVEKYTTEVVVNVGGTMQMLGGRQNGGAGAPAGGGQGGSNNNNGWGQPQQPQQGGGNQFSGGSQPSR
PQPQQNNAPASSEPPMDFDDDIPF

Nucleotide


Download         Length: 555 bp        

>NTDB_id=996098 AAGR22_RS01945 WP_067704468.1 442372..442926(+) (ssb) [Erwinia sp. HDF1-3R]
ATGGCCAGCAGAGGCGTAAACAAAGTGATTCTGGTCGGAAATCTGGGTCAGGACCCGGAAGTCCGCTACATGCCGAATGG
CGGCGCCGTTGCCAACATTACCCTCGCCACGTCCGAAAGCTGGCGTGACAAGCAGACCGGCGAAACCAAAGAGAAGACGG
AATGGCACCGCGTCGTGCTGTTCGGCAAGCTGGCAGAAGTTGCCGGTGAGTACCTGCGTAAAGGCTCTCAGGTTTATATC
GAGGGTGCACTGCAGACGCGTAAATGGACCGATCAGGCGGGCGTGGAAAAATACACCACCGAGGTCGTGGTTAACGTTGG
TGGCACCATGCAAATGCTCGGTGGCCGTCAGAACGGCGGTGCAGGCGCGCCAGCTGGCGGCGGTCAGGGCGGCAGCAACA
ATAACAACGGTTGGGGCCAGCCACAGCAGCCACAGCAGGGCGGCGGTAACCAGTTTAGCGGCGGTTCACAGCCATCCCGC
CCGCAGCCTCAGCAGAACAACGCACCGGCCAGCAGCGAACCTCCGATGGATTTTGATGACGATATCCCATTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

68.817

100

0.696
  ssb Glaesserella parasuis strain SC1401

57.068

100

0.592
  ssb Neisseria meningitidis MC58

45.161

100

0.457
  ssb Neisseria gonorrhoeae MS11

45.161

100

0.457

Multiple sequence alignment