Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | ABC965_RS01735 | Genome accession | NZ_CP155063 |
| Coordinates | 402478..402981 (+) | Length | 167 a.a. |
| NCBI ID | WP_000934799.1 | Uniprot ID | A0A7U7IE99 |
| Organism | Staphylococcus aureus strain CC130-MRSA-XI | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 398418..424630 | 402478..402981 | within | 0 |
Gene organization within MGE regions
Location: 398418..424630
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABC965_RS01705 (ABC965_01705) | - | 398418..399263 (+) | 846 | WP_345852441.1 | ParB/RepB/Spo0J family partition protein | - |
| ABC965_RS01710 (ABC965_01710) | - | 399417..400298 (+) | 882 | WP_217187892.1 | mechanosensitive ion channel family protein | - |
| ABC965_RS01715 (ABC965_01715) | - | 400328..400531 (+) | 204 | WP_000157348.1 | DUF951 domain-containing protein | - |
| ABC965_RS01720 (ABC965_01720) | ychF | 400543..401640 (+) | 1098 | WP_001218732.1 | redox-regulated ATPase YchF | - |
| ABC965_RS01725 (ABC965_01725) | - | 401726..401917 (-) | 192 | WP_001052483.1 | hypothetical protein | - |
| ABC965_RS01730 (ABC965_01730) | rpsF | 402161..402457 (+) | 297 | WP_001261460.1 | 30S ribosomal protein S6 | - |
| ABC965_RS01735 (ABC965_01735) | ssbA | 402478..402981 (+) | 504 | WP_000934799.1 | single-stranded DNA-binding protein | Machinery gene |
| ABC965_RS01740 (ABC965_01740) | rpsR | 403033..403275 (+) | 243 | WP_000897044.1 | 30S ribosomal protein S18 | - |
| ABC965_RS01745 (ABC965_01745) | - | 403504..404301 (-) | 798 | WP_000119675.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| ABC965_RS01750 (ABC965_01750) | - | 404325..405539 (-) | 1215 | WP_345852444.1 | site-specific integrase | - |
| ABC965_RS01755 (ABC965_01755) | - | 405543..406343 (-) | 801 | WP_070027168.1 | hypothetical protein | - |
| ABC965_RS01760 (ABC965_01760) | - | 406604..407212 (-) | 609 | WP_070027167.1 | helix-turn-helix transcriptional regulator | - |
| ABC965_RS01765 (ABC965_01765) | - | 407363..407527 (+) | 165 | WP_070027166.1 | helix-turn-helix domain-containing protein | - |
| ABC965_RS01770 (ABC965_01770) | - | 407528..407800 (+) | 273 | WP_070027165.1 | helix-turn-helix domain-containing protein | - |
| ABC965_RS01775 (ABC965_01775) | - | 407812..407958 (+) | 147 | WP_000784893.1 | hypothetical protein | - |
| ABC965_RS01780 (ABC965_01780) | - | 407951..408163 (+) | 213 | WP_001058497.1 | hypothetical protein | - |
| ABC965_RS01785 (ABC965_01785) | - | 408165..408524 (+) | 360 | WP_070027164.1 | pathogenicity island protein | - |
| ABC965_RS01790 (ABC965_01790) | - | 408525..408845 (+) | 321 | WP_070027162.1 | DUF1474 family protein | - |
| ABC965_RS01795 (ABC965_01795) | - | 408912..409781 (+) | 870 | WP_345852451.1 | primase alpha helix C-terminal domain-containing protein | - |
| ABC965_RS01800 (ABC965_01800) | - | 409798..411267 (+) | 1470 | WP_197842433.1 | VapE domain-containing protein | - |
| ABC965_RS01805 (ABC965_01805) | - | 411553..411915 (+) | 363 | WP_197842432.1 | pathogenicity island protein | - |
| ABC965_RS01810 (ABC965_01810) | - | 411917..412201 (+) | 285 | WP_070027304.1 | pathogenicity island protein | - |
| ABC965_RS01815 (ABC965_01815) | - | 412198..412839 (+) | 642 | WP_070027306.1 | pathogenicity island protein | - |
| ABC965_RS01820 (ABC965_01820) | - | 413356..413697 (+) | 342 | WP_197853888.1 | pathogenicity island protein | - |
| ABC965_RS01825 (ABC965_01825) | - | 413709..414287 (+) | 579 | WP_197853889.1 | pathogenicity island protein | - |
| ABC965_RS01830 (ABC965_01830) | - | 414305..414523 (+) | 219 | WP_197853890.1 | capsid morphogenesis B protein | - |
| ABC965_RS01835 (ABC965_01835) | - | 414574..415101 (+) | 528 | WP_197853891.1 | spore coat protein | - |
| ABC965_RS01840 (ABC965_01840) | - | 415233..415445 (+) | 213 | WP_197854018.1 | pathogenicity island family protein | - |
| ABC965_RS01845 (ABC965_01845) | - | 415442..416011 (+) | 570 | WP_197842431.1 | terminase small subunit | - |
| ABC965_RS01850 (ABC965_01850) | - | 416086..416445 (-) | 360 | WP_000935290.1 | hypothetical protein | - |
| ABC965_RS01855 (ABC965_01855) | - | 416562..416951 (-) | 390 | WP_070027256.1 | hypothetical protein | - |
| ABC965_RS01860 (ABC965_01860) | - | 416953..418164 (-) | 1212 | WP_197842430.1 | hypothetical protein | - |
| ABC965_RS01865 (ABC965_01865) | - | 418191..418583 (+) | 393 | WP_164095141.1 | DUF1433 domain-containing protein | - |
| ABC965_RS01870 (ABC965_01870) | - | 418702..419145 (+) | 444 | WP_070027254.1 | GNAT family N-acetyltransferase | - |
| ABC965_RS01875 (ABC965_01875) | - | 419655..420662 (-) | 1008 | WP_001080631.1 | Abi family protein | - |
| ABC965_RS01880 (ABC965_01880) | - | 420668..421380 (-) | 713 | Protein_373 | tyrosine-type recombinase/integrase | - |
| ABC965_RS01885 (ABC965_01885) | selX | 421580..422191 (+) | 612 | WP_000475322.1 | staphylococcal enterotoxin-like toxin X | - |
| ABC965_RS01890 (ABC965_01890) | - | 422560..422928 (+) | 369 | WP_000849165.1 | YxeA family protein | - |
| ABC965_RS01895 (ABC965_01895) | - | 423109..423681 (+) | 573 | WP_000769722.1 | PepSY domain-containing protein | - |
| ABC965_RS01900 (ABC965_01900) | - | 423819..424082 (-) | 264 | WP_001055897.1 | helix-turn-helix transcriptional regulator | - |
| ABC965_RS01905 (ABC965_01905) | - | 424376..424630 (+) | 255 | WP_000466742.1 | GlsB/YeaQ/YmgE family stress response membrane protein | - |
Sequence
Protein
Download Length: 167 a.a. Molecular weight: 18539.12 Da Isoelectric Point: 4.7305
>NTDB_id=996034 ABC965_RS01735 WP_000934799.1 402478..402981(+) (ssbA) [Staphylococcus aureus strain CC130-MRSA-XI]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
Nucleotide
Download Length: 504 bp
>NTDB_id=996034 ABC965_RS01735 WP_000934799.1 402478..402981(+) (ssbA) [Staphylococcus aureus strain CC130-MRSA-XI]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
65.341 |
100 |
0.689 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.971 |
100 |
0.563 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.473 |
0.371 |
| ssb | Glaesserella parasuis strain SC1401 |
34.463 |
100 |
0.365 |