Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | ABC966_RS01735 | Genome accession | NZ_CP155062 |
| Coordinates | 402203..402706 (+) | Length | 167 a.a. |
| NCBI ID | WP_000934799.1 | Uniprot ID | A0A7U7IE99 |
| Organism | Staphylococcus aureus strain CC130-MRSA-XI | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 398143..424547 | 402203..402706 | within | 0 |
Gene organization within MGE regions
Location: 398143..424547
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABC966_RS01705 (ABC966_01705) | - | 398143..398988 (+) | 846 | WP_001621659.1 | ParB/RepB/Spo0J family partition protein | - |
| ABC966_RS01710 (ABC966_01710) | - | 399142..400023 (+) | 882 | WP_000373075.1 | mechanosensitive ion channel family protein | - |
| ABC966_RS01715 (ABC966_01715) | - | 400053..400256 (+) | 204 | WP_000157348.1 | DUF951 domain-containing protein | - |
| ABC966_RS01720 (ABC966_01720) | ychF | 400268..401365 (+) | 1098 | WP_001218732.1 | redox-regulated ATPase YchF | - |
| ABC966_RS01725 (ABC966_01725) | - | 401451..401642 (-) | 192 | WP_001052483.1 | hypothetical protein | - |
| ABC966_RS01730 (ABC966_01730) | rpsF | 401886..402182 (+) | 297 | WP_001261460.1 | 30S ribosomal protein S6 | - |
| ABC966_RS01735 (ABC966_01735) | ssbA | 402203..402706 (+) | 504 | WP_000934799.1 | single-stranded DNA-binding protein | Machinery gene |
| ABC966_RS01740 (ABC966_01740) | rpsR | 402758..403000 (+) | 243 | WP_000897044.1 | 30S ribosomal protein S18 | - |
| ABC966_RS01745 (ABC966_01745) | - | 403229..404026 (-) | 798 | WP_000119675.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| ABC966_RS01750 (ABC966_01750) | - | 404050..405264 (-) | 1215 | WP_046597213.1 | site-specific integrase | - |
| ABC966_RS01755 (ABC966_01755) | - | 405615..406253 (-) | 639 | WP_345880668.1 | helix-turn-helix transcriptional regulator | - |
| ABC966_RS01760 (ABC966_01760) | - | 406425..406637 (+) | 213 | WP_001245562.1 | helix-turn-helix transcriptional regulator | - |
| ABC966_RS01765 (ABC966_01765) | - | 406638..406910 (+) | 273 | WP_001138300.1 | helix-turn-helix domain-containing protein | - |
| ABC966_RS01770 (ABC966_01770) | - | 406922..407077 (+) | 156 | WP_345880669.1 | pathogenicity island protein | - |
| ABC966_RS01775 (ABC966_01775) | - | 407062..407265 (+) | 204 | WP_232043922.1 | pathogenicity island protein | - |
| ABC966_RS01780 (ABC966_01780) | - | 407267..407650 (+) | 384 | WP_000403836.1 | hypothetical protein | - |
| ABC966_RS01785 (ABC966_01785) | - | 407651..407974 (+) | 324 | WP_070027269.1 | DUF1474 family protein | - |
| ABC966_RS01790 (ABC966_01790) | - | 408039..408908 (+) | 870 | WP_001002692.1 | primase alpha helix C-terminal domain-containing protein | - |
| ABC966_RS01795 (ABC966_01795) | - | 408925..410382 (+) | 1458 | WP_070047296.1 | virulence-associated E family protein | - |
| ABC966_RS01800 (ABC966_01800) | - | 410683..411045 (+) | 363 | WP_262610989.1 | pathogenicity island protein | - |
| ABC966_RS01805 (ABC966_01805) | - | 411047..411331 (+) | 285 | WP_046597205.1 | hypothetical protein | - |
| ABC966_RS01810 (ABC966_01810) | - | 411328..411969 (+) | 642 | WP_345880670.1 | pathogenicity island protein | - |
| ABC966_RS01815 (ABC966_01815) | - | 412505..412846 (+) | 342 | WP_001190614.1 | hypothetical protein | - |
| ABC966_RS01820 (ABC966_01820) | - | 412858..413436 (+) | 579 | WP_070027307.1 | pathogenicity island protein | - |
| ABC966_RS01825 (ABC966_01825) | - | 413454..413672 (+) | 219 | WP_000853271.1 | capsid morphogenesis B protein | - |
| ABC966_RS01830 (ABC966_01830) | - | 413723..414250 (+) | 528 | WP_345880671.1 | spore coat protein | - |
| ABC966_RS01835 (ABC966_01835) | - | 414382..414594 (+) | 213 | WP_345880697.1 | pathogenicity island family protein | - |
| ABC966_RS01840 (ABC966_01840) | - | 414591..415160 (+) | 570 | WP_001293074.1 | terminase small subunit | - |
| ABC966_RS01845 (ABC966_01845) | - | 415357..415950 (+) | 594 | WP_224061841.1 | ImmA/IrrE family metallo-endopeptidase | - |
| ABC966_RS01850 (ABC966_01850) | - | 415980..417068 (+) | 1089 | WP_159427317.1 | FRG domain-containing protein | - |
| ABC966_RS01855 (ABC966_01855) | - | 417892..418173 (+) | 282 | WP_345880672.1 | hypothetical protein | - |
| ABC966_RS01860 (ABC966_01860) | - | 418291..418803 (+) | 513 | WP_000813311.1 | hypothetical protein | - |
| ABC966_RS01865 (ABC966_01865) | - | 418819..418998 (+) | 180 | WP_000797954.1 | hypothetical protein | - |
| ABC966_RS01870 (ABC966_01870) | - | 419572..420579 (-) | 1008 | WP_001080631.1 | Abi family protein | - |
| ABC966_RS01875 (ABC966_01875) | - | 420585..421297 (-) | 713 | Protein_372 | tyrosine-type recombinase/integrase | - |
| ABC966_RS01880 (ABC966_01880) | selX | 421497..422108 (+) | 612 | WP_000475322.1 | staphylococcal enterotoxin-like toxin X | - |
| ABC966_RS01885 (ABC966_01885) | - | 422477..422845 (+) | 369 | WP_000849165.1 | YxeA family protein | - |
| ABC966_RS01890 (ABC966_01890) | - | 423026..423598 (+) | 573 | WP_000769722.1 | PepSY domain-containing protein | - |
| ABC966_RS01895 (ABC966_01895) | - | 423736..423999 (-) | 264 | WP_001055897.1 | helix-turn-helix transcriptional regulator | - |
| ABC966_RS01900 (ABC966_01900) | - | 424293..424547 (+) | 255 | WP_000466742.1 | GlsB/YeaQ/YmgE family stress response membrane protein | - |
Sequence
Protein
Download Length: 167 a.a. Molecular weight: 18539.12 Da Isoelectric Point: 4.7305
>NTDB_id=995991 ABC966_RS01735 WP_000934799.1 402203..402706(+) (ssbA) [Staphylococcus aureus strain CC130-MRSA-XI]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
Nucleotide
Download Length: 504 bp
>NTDB_id=995991 ABC966_RS01735 WP_000934799.1 402203..402706(+) (ssbA) [Staphylococcus aureus strain CC130-MRSA-XI]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
65.341 |
100 |
0.689 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.971 |
100 |
0.563 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.473 |
0.371 |
| ssb | Glaesserella parasuis strain SC1401 |
34.463 |
100 |
0.365 |