Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | ABC967_RS01580 | Genome accession | NZ_CP155059 |
| Coordinates | 360041..360544 (+) | Length | 167 a.a. |
| NCBI ID | WP_000934799.1 | Uniprot ID | A0A7U7IE99 |
| Organism | Staphylococcus aureus strain CC133-MSSA | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 355981..382236 | 360041..360544 | within | 0 |
Gene organization within MGE regions
Location: 355981..382236
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABC967_RS01550 (ABC967_01550) | - | 355981..356826 (+) | 846 | WP_001621659.1 | ParB/RepB/Spo0J family partition protein | - |
| ABC967_RS01555 (ABC967_01555) | - | 356980..357861 (+) | 882 | WP_000373075.1 | mechanosensitive ion channel family protein | - |
| ABC967_RS01560 (ABC967_01560) | - | 357891..358094 (+) | 204 | WP_000157348.1 | DUF951 domain-containing protein | - |
| ABC967_RS01565 (ABC967_01565) | ychF | 358106..359203 (+) | 1098 | WP_001218732.1 | redox-regulated ATPase YchF | - |
| ABC967_RS01570 (ABC967_01570) | - | 359289..359480 (-) | 192 | WP_109183230.1 | hypothetical protein | - |
| ABC967_RS01575 (ABC967_01575) | rpsF | 359724..360020 (+) | 297 | WP_001261460.1 | 30S ribosomal protein S6 | - |
| ABC967_RS01580 (ABC967_01580) | ssbA | 360041..360544 (+) | 504 | WP_000934799.1 | single-stranded DNA-binding protein | Machinery gene |
| ABC967_RS01585 (ABC967_01585) | rpsR | 360596..360838 (+) | 243 | WP_000897044.1 | 30S ribosomal protein S18 | - |
| ABC967_RS01590 (ABC967_01590) | - | 361080..362309 (-) | 1230 | WP_109183231.1 | site-specific integrase | - |
| ABC967_RS01595 (ABC967_01595) | - | 362670..363578 (-) | 909 | WP_233644479.1 | helix-turn-helix transcriptional regulator | - |
| ABC967_RS01600 (ABC967_01600) | - | 363687..363887 (+) | 201 | WP_109183232.1 | helix-turn-helix domain-containing protein | - |
| ABC967_RS01605 (ABC967_01605) | - | 363933..364205 (+) | 273 | WP_033854766.1 | hypothetical protein | - |
| ABC967_RS01610 (ABC967_01610) | - | 364217..364372 (+) | 156 | WP_000784886.1 | hypothetical protein | - |
| ABC967_RS01615 (ABC967_01615) | - | 364357..364554 (+) | 198 | WP_109183233.1 | pathogenicity island protein | - |
| ABC967_RS01620 (ABC967_01620) | - | 364560..364943 (+) | 384 | WP_109183234.1 | pathogenicity island protein | - |
| ABC967_RS01625 (ABC967_01625) | - | 364944..365240 (+) | 297 | WP_109183235.1 | DUF1474 family protein | - |
| ABC967_RS01630 (ABC967_01630) | - | 365315..366928 (+) | 1614 | WP_217187816.1 | phage resistance protein | - |
| ABC967_RS01635 (ABC967_01635) | - | 367099..367902 (+) | 804 | WP_109183237.1 | bifunctional DNA primase/polymerase | - |
| ABC967_RS01640 (ABC967_01640) | - | 367889..368161 (+) | 273 | WP_001149389.1 | hypothetical protein | - |
| ABC967_RS01645 (ABC967_01645) | - | 368163..368804 (+) | 642 | WP_109183238.1 | pathogenicity island protein | - |
| ABC967_RS01650 (ABC967_01650) | - | 369151..369492 (+) | 342 | WP_109183239.1 | pathogenicity island protein | - |
| ABC967_RS01655 (ABC967_01655) | - | 369504..370082 (+) | 579 | WP_000846288.1 | hypothetical protein | - |
| ABC967_RS01660 (ABC967_01660) | - | 370100..370318 (+) | 219 | WP_000853271.1 | capsid morphogenesis B protein | - |
| ABC967_RS01665 (ABC967_01665) | - | 370369..370896 (+) | 528 | WP_109183240.1 | spore coat protein | - |
| ABC967_RS01670 (ABC967_01670) | - | 371028..371240 (+) | 213 | WP_109183249.1 | LuxR C-terminal-related transcriptional regulator | - |
| ABC967_RS01675 (ABC967_01675) | - | 371237..371806 (+) | 570 | WP_109183241.1 | terminase small subunit | - |
| ABC967_RS01680 (ABC967_01680) | - | 371913..372263 (+) | 351 | WP_000768417.1 | complement inhibitor SCIN family protein | - |
| ABC967_RS01685 (ABC967_01685) | vwb | 372522..374021 (+) | 1500 | WP_109183242.1 | von Willebrand factor binding protein Vwb | - |
| ABC967_RS01690 (ABC967_01690) | - | 374333..374614 (+) | 282 | WP_025174648.1 | hypothetical protein | - |
| ABC967_RS01695 (ABC967_01695) | - | 374733..375245 (+) | 513 | WP_109183243.1 | hypothetical protein | - |
| ABC967_RS01700 (ABC967_01700) | - | 375261..375440 (+) | 180 | WP_000797954.1 | hypothetical protein | - |
| ABC967_RS01705 (ABC967_01705) | - | 375908..376633 (+) | 726 | WP_000166620.1 | CPBP family intramembrane glutamic endopeptidase | - |
| ABC967_RS01710 (ABC967_01710) | - | 377283..378290 (-) | 1008 | WP_001080631.1 | Abi family protein | - |
| ABC967_RS01715 (ABC967_01715) | - | 378296..378980 (-) | 685 | Protein_340 | tyrosine-type recombinase/integrase | - |
| ABC967_RS01720 (ABC967_01720) | selX | 379186..379797 (+) | 612 | WP_065315809.1 | staphylococcal enterotoxin-like toxin X | - |
| ABC967_RS01725 (ABC967_01725) | - | 380166..380534 (+) | 369 | WP_000849161.1 | YxeA family protein | - |
| ABC967_RS01730 (ABC967_01730) | - | 380715..381287 (+) | 573 | WP_000769722.1 | PepSY domain-containing protein | - |
| ABC967_RS01735 (ABC967_01735) | - | 381425..381688 (-) | 264 | WP_001055897.1 | helix-turn-helix transcriptional regulator | - |
| ABC967_RS01740 (ABC967_01740) | - | 381982..382236 (+) | 255 | WP_000466742.1 | GlsB/YeaQ/YmgE family stress response membrane protein | - |
Sequence
Protein
Download Length: 167 a.a. Molecular weight: 18539.12 Da Isoelectric Point: 4.7305
>NTDB_id=995906 ABC967_RS01580 WP_000934799.1 360041..360544(+) (ssbA) [Staphylococcus aureus strain CC133-MSSA]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
Nucleotide
Download Length: 504 bp
>NTDB_id=995906 ABC967_RS01580 WP_000934799.1 360041..360544(+) (ssbA) [Staphylococcus aureus strain CC133-MSSA]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGTGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGTGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
65.341 |
100 |
0.689 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.971 |
100 |
0.563 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.473 |
0.371 |
| ssb | Glaesserella parasuis strain SC1401 |
34.463 |
100 |
0.365 |