Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   AAVB50_RS00810 Genome accession   NZ_CP154923
Coordinates   117340..117858 (+) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain FUA2233     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 112340..122858
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVB50_RS00790 (AAVB50_00790) yyzM 113414..113620 (+) 207 WP_003226838.1 DUF951 family protein -
  AAVB50_RS00795 (AAVB50_00795) yyaE 113671..115674 (+) 2004 WP_345805721.1 molybdopterin-dependent oxidoreductase -
  AAVB50_RS00800 (AAVB50_00800) ychF 115801..116901 (+) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  AAVB50_RS00805 (AAVB50_00805) rpsF 117012..117299 (+) 288 WP_003244064.1 30S ribosomal protein S6 -
  AAVB50_RS00810 (AAVB50_00810) ssbA 117340..117858 (+) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  AAVB50_RS00815 (AAVB50_00815) rpsR 117902..118141 (+) 240 WP_003219224.1 30S ribosomal protein S18 -
  AAVB50_RS00820 (AAVB50_00820) xth 118206..118964 (+) 759 WP_345805722.1 exodeoxyribonuclease III -
  AAVB50_RS00825 (AAVB50_00825) ccpB 119023..119958 (+) 936 WP_345805723.1 transcriptional regulator CcpB -
  AAVB50_RS00830 (AAVB50_00830) yyaH 120014..120394 (+) 381 WP_015250784.1 VOC family protein -
  AAVB50_RS00835 (AAVB50_00835) maa 120410..120964 (+) 555 WP_116315634.1 sugar O-acetyltransferase -
  AAVB50_RS00840 (AAVB50_00840) yyaJ 120998..122353 (-) 1356 WP_345805724.1 MFS transporter -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=995502 AAVB50_RS00810 WP_003219228.1 117340..117858(+) (ssbA) [Bacillus subtilis strain FUA2233]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=995502 AAVB50_RS00810 WP_003219228.1 117340..117858(+) (ssbA) [Bacillus subtilis strain FUA2233]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment