Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   AAYR29_RS18015 Genome accession   NZ_CP154918
Coordinates   3346784..3347302 (+) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain FUA2231     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3341784..3352302
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAYR29_RS17995 (AAYR29_17995) yyzM 3342858..3343064 (+) 207 WP_003226838.1 DUF951 family protein -
  AAYR29_RS18000 (AAYR29_18000) yyaE 3343115..3345118 (+) 2004 WP_345805721.1 molybdopterin-dependent oxidoreductase -
  AAYR29_RS18005 (AAYR29_18005) ychF 3345245..3346345 (+) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  AAYR29_RS18010 (AAYR29_18010) rpsF 3346456..3346743 (+) 288 WP_003244064.1 30S ribosomal protein S6 -
  AAYR29_RS18015 (AAYR29_18015) ssbA 3346784..3347302 (+) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  AAYR29_RS18020 (AAYR29_18020) rpsR 3347346..3347585 (+) 240 WP_003219224.1 30S ribosomal protein S18 -
  AAYR29_RS18025 (AAYR29_18025) xth 3347650..3348408 (+) 759 WP_345805722.1 exodeoxyribonuclease III -
  AAYR29_RS18030 (AAYR29_18030) ccpB 3348467..3349402 (+) 936 WP_345805723.1 transcriptional regulator CcpB -
  AAYR29_RS18035 (AAYR29_18035) yyaH 3349458..3349838 (+) 381 WP_015250784.1 VOC family protein -
  AAYR29_RS18040 (AAYR29_18040) maa 3349854..3350408 (+) 555 WP_116315634.1 sugar O-acetyltransferase -
  AAYR29_RS18045 (AAYR29_18045) yyaJ 3350442..3351797 (-) 1356 WP_345805724.1 MFS transporter -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=995404 AAYR29_RS18015 WP_003219228.1 3346784..3347302(+) (ssbA) [Bacillus subtilis strain FUA2231]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=995404 AAYR29_RS18015 WP_003219228.1 3346784..3347302(+) (ssbA) [Bacillus subtilis strain FUA2231]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment