Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   AAYR28_RS11385 Genome accession   NZ_CP154909
Coordinates   2226458..2226751 (-) Length   97 a.a.
NCBI ID   WP_024422977.1    Uniprot ID   A0A0M2EIN6
Organism   Bacillus safensis strain FUA2117     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2221458..2231751
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAYR28_RS11335 (AAYR28_11335) sinR 2221622..2221957 (+) 336 WP_024422969.1 transcriptional regulator SinR Regulator
  AAYR28_RS11340 (AAYR28_11340) - 2222025..2222825 (-) 801 WP_034280222.1 TasA family protein -
  AAYR28_RS11345 (AAYR28_11345) - 2222883..2223455 (-) 573 WP_034280218.1 signal peptidase I -
  AAYR28_RS11350 (AAYR28_11350) tapA 2223508..2224035 (-) 528 WP_120208209.1 amyloid fiber anchoring/assembly protein TapA -
  AAYR28_RS11355 (AAYR28_11355) - 2224335..2224613 (+) 279 WP_061109527.1 DUF3889 domain-containing protein -
  AAYR28_RS11360 (AAYR28_11360) - 2224648..2224842 (-) 195 WP_120208337.1 YqzE family protein -
  AAYR28_RS11365 (AAYR28_11365) comGG 2224902..2225285 (-) 384 WP_345808828.1 competence type IV pilus minor pilin ComGG -
  AAYR28_RS11370 (AAYR28_11370) comGF 2225282..2225809 (-) 528 WP_326487288.1 competence type IV pilus minor pilin ComGF -
  AAYR28_RS11375 (AAYR28_11375) comGE 2225721..2226035 (-) 315 WP_208946439.1 competence type IV pilus minor pilin ComGE -
  AAYR28_RS11380 (AAYR28_11380) comGD 2226019..2226465 (-) 447 WP_197172667.1 competence type IV pilus minor pilin ComGD -
  AAYR28_RS11385 (AAYR28_11385) comGC 2226458..2226751 (-) 294 WP_024422977.1 competence type IV pilus major pilin ComGC Machinery gene
  AAYR28_RS11390 (AAYR28_11390) comGB 2226768..2227808 (-) 1041 WP_125586580.1 competence type IV pilus assembly protein ComGB -
  AAYR28_RS11395 (AAYR28_11395) comGA 2227789..2228859 (-) 1071 WP_041117979.1 competence type IV pilus ATPase ComGA Machinery gene
  AAYR28_RS11400 (AAYR28_11400) - 2229040..2229915 (-) 876 WP_024422979.1 STAS domain-containing protein -
  AAYR28_RS11410 (AAYR28_11410) - 2230139..2230519 (-) 381 WP_007501232.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  AAYR28_RS11415 (AAYR28_11415) - 2230732..2230974 (+) 243 WP_003217440.1 DUF2626 domain-containing protein -
  AAYR28_RS11420 (AAYR28_11420) - 2231021..2231659 (-) 639 WP_034280195.1 MBL fold metallo-hydrolase -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10686.62 Da        Isoelectric Point: 7.3218

>NTDB_id=995192 AAYR28_RS11385 WP_024422977.1 2226458..2226751(-) (comGC) [Bacillus safensis strain FUA2117]
MNDKGFTLLEMLIVMLVISILLLITIPNITRHHQAIQAKGCEGLKSMVSTQVMAYELEHDGKTPSLAELEKEGYVKKGLT
CPNGKAIVIQNGNVKHE

Nucleotide


Download         Length: 294 bp        

>NTDB_id=995192 AAYR28_RS11385 WP_024422977.1 2226458..2226751(-) (comGC) [Bacillus safensis strain FUA2117]
ATGAATGATAAAGGATTTACCCTGTTAGAAATGTTAATAGTCATGCTCGTAATATCCATTCTTTTACTCATTACCATACC
GAATATCACACGTCATCACCAAGCGATTCAGGCAAAGGGCTGTGAAGGGCTTAAATCAATGGTCAGCACACAAGTGATGG
CATATGAATTGGAGCATGATGGGAAGACGCCATCTTTAGCTGAATTAGAAAAAGAAGGTTATGTCAAAAAGGGATTAACT
TGTCCTAATGGAAAAGCGATTGTCATTCAAAACGGCAACGTGAAGCATGAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0M2EIN6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

67.01

100

0.67
  comGC Staphylococcus aureus MW2

42.222

92.784

0.392
  comGC Staphylococcus aureus N315

42.222

92.784

0.392

Multiple sequence alignment