Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   EJN10_RS23735 Genome accession   NZ_LR130528
Coordinates   4993354..4993683 (-) Length   109 a.a.
NCBI ID   WP_003104586.1    Uniprot ID   Q9HZ87
Organism   Pseudomonas aeruginosa isolate paerg000     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4988354..4998683
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EJN10_RS23720 (BANRA_04634) uvrB 4989741..4991753 (-) 2013 WP_125120952.1 excinuclease ABC subunit UvrB Machinery gene
  EJN10_RS23725 (BANRA_04635) - 4991941..4993137 (+) 1197 WP_124102022.1 amino acid aminotransferase -
  EJN10_RS23735 (BANRA_04637) comEA/comE1 4993354..4993683 (-) 330 WP_003104586.1 ComEA family DNA-binding protein Machinery gene
  EJN10_RS23740 (BANRA_04638) - 4993874..4995871 (-) 1998 WP_125120953.1 polysaccharide biosynthesis protein -
  EJN10_RS23745 (BANRA_04639) - 4996002..4997027 (-) 1026 WP_004350972.1 MraY family glycosyltransferase -
  EJN10_RS23750 (BANRA_04640) - 4997024..4997983 (-) 960 WP_004350973.1 UDP-glucose 4-epimerase family protein -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11351.31 Da        Isoelectric Point: 8.0459

>NTDB_id=995193 EJN10_RS23735 WP_003104586.1 4993354..4993683(-) (comEA/comE1) [Pseudomonas aeruginosa isolate paerg000]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRARIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=995193 EJN10_RS23735 WP_003104586.1 4993354..4993683(-) (comEA/comE1) [Pseudomonas aeruginosa isolate paerg000]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGGCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9HZ87

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385

Multiple sequence alignment