Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   AAYR28_RS11395 Genome accession   NZ_CP154909
Coordinates   2227789..2228859 (-) Length   356 a.a.
NCBI ID   WP_041117979.1    Uniprot ID   -
Organism   Bacillus safensis strain FUA2117     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2222789..2233859
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAYR28_RS11345 (AAYR28_11345) - 2222883..2223455 (-) 573 WP_034280218.1 signal peptidase I -
  AAYR28_RS11350 (AAYR28_11350) tapA 2223508..2224035 (-) 528 WP_120208209.1 amyloid fiber anchoring/assembly protein TapA -
  AAYR28_RS11355 (AAYR28_11355) - 2224335..2224613 (+) 279 WP_061109527.1 DUF3889 domain-containing protein -
  AAYR28_RS11360 (AAYR28_11360) - 2224648..2224842 (-) 195 WP_120208337.1 YqzE family protein -
  AAYR28_RS11365 (AAYR28_11365) comGG 2224902..2225285 (-) 384 WP_345808828.1 competence type IV pilus minor pilin ComGG -
  AAYR28_RS11370 (AAYR28_11370) comGF 2225282..2225809 (-) 528 WP_326487288.1 competence type IV pilus minor pilin ComGF -
  AAYR28_RS11375 (AAYR28_11375) comGE 2225721..2226035 (-) 315 WP_208946439.1 competence type IV pilus minor pilin ComGE -
  AAYR28_RS11380 (AAYR28_11380) comGD 2226019..2226465 (-) 447 WP_197172667.1 competence type IV pilus minor pilin ComGD -
  AAYR28_RS11385 (AAYR28_11385) comGC 2226458..2226751 (-) 294 WP_024422977.1 competence type IV pilus major pilin ComGC Machinery gene
  AAYR28_RS11390 (AAYR28_11390) comGB 2226768..2227808 (-) 1041 WP_125586580.1 competence type IV pilus assembly protein ComGB -
  AAYR28_RS11395 (AAYR28_11395) comGA 2227789..2228859 (-) 1071 WP_041117979.1 competence type IV pilus ATPase ComGA Machinery gene
  AAYR28_RS11400 (AAYR28_11400) - 2229040..2229915 (-) 876 WP_024422979.1 STAS domain-containing protein -
  AAYR28_RS11410 (AAYR28_11410) - 2230139..2230519 (-) 381 WP_007501232.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  AAYR28_RS11415 (AAYR28_11415) - 2230732..2230974 (+) 243 WP_003217440.1 DUF2626 domain-containing protein -
  AAYR28_RS11420 (AAYR28_11420) - 2231021..2231659 (-) 639 WP_034280195.1 MBL fold metallo-hydrolase -
  AAYR28_RS11425 (AAYR28_11425) - 2231815..2231988 (+) 174 WP_003217333.1 DUF2759 domain-containing protein -
  AAYR28_RS11430 (AAYR28_11430) - 2232012..2232326 (-) 315 WP_024427984.1 MTH1187 family thiamine-binding protein -
  AAYR28_RS11435 (AAYR28_11435) - 2232403..2233656 (-) 1254 WP_065214634.1 MFS transporter -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40398.79 Da        Isoelectric Point: 9.4061

>NTDB_id=995193 AAYR28_RS11395 WP_041117979.1 2227789..2228859(-) (comGA) [Bacillus safensis strain FUA2117]
MYGIEYLRQELLEEACRMRASDVHIVPKEKEASVSFRVDSDLIQQRTIDKKSGERLIAHFKFLSSMDIGEKRRPQNGSLA
VMLRNGQVFIRMSTLPTVNDESLVIRILPQDHVPKIKHLSLFPKASARLLSFLNHSHGLILFTGPTNSGKTTTLYSLIQF
AKKNFNRNIITLEDPVETRNEEVLQVQVNEKAGITYAAGLRAILRHDPDVIVLGEIRDAETARTAIRAALTGHLVLSTLH
AKNAKGALYRMLEFGVTMNELEQTMVAIAAQRLIELTCPFCGERCQLYCKLNRPIRRTNVFELLFGKELGECIKEAKGEY
AHSSYETLQRLIRKGVALGYLSKNTYHRWVYEEASL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=995193 AAYR28_RS11395 WP_041117979.1 2227789..2228859(-) (comGA) [Bacillus safensis strain FUA2117]
TTGTATGGGATTGAATATTTAAGGCAAGAGCTGCTAGAAGAAGCATGCCGCATGAGGGCTTCTGATGTGCATATTGTGCC
AAAAGAAAAGGAAGCTTCGGTCTCATTTCGTGTTGACTCAGATTTAATCCAGCAGCGAACGATTGATAAAAAAAGCGGAG
AGCGGCTTATTGCACATTTTAAGTTTTTATCTTCTATGGATATCGGGGAAAAAAGGAGGCCGCAAAATGGTTCACTAGCT
GTGATGCTAAGAAACGGTCAAGTGTTTATTCGGATGTCTACCTTGCCGACAGTGAATGATGAGAGCTTAGTGATTAGAAT
TTTACCGCAGGATCATGTTCCGAAAATTAAACATCTATCATTATTTCCGAAAGCCTCAGCCAGATTATTATCCTTTTTAA
ACCACTCGCATGGACTCATTTTATTTACTGGGCCAACCAATTCGGGGAAAACAACAACCCTCTATTCACTGATCCAGTTT
GCAAAAAAGAATTTCAACCGAAATATTATTACCCTTGAAGATCCTGTCGAAACAAGGAATGAAGAAGTGCTGCAGGTTCA
AGTAAATGAAAAAGCCGGCATCACGTATGCCGCTGGATTACGCGCTATATTAAGACATGATCCAGATGTGATTGTGCTAG
GAGAAATAAGAGATGCTGAAACGGCCAGAACGGCGATTAGAGCAGCACTGACAGGCCATTTAGTATTGAGTACGCTCCAT
GCAAAAAATGCAAAAGGAGCCCTTTACCGCATGCTTGAATTTGGTGTCACGATGAATGAACTTGAGCAAACGATGGTTGC
AATTGCTGCGCAGCGATTAATCGAGCTCACCTGTCCTTTTTGCGGAGAAAGATGTCAGCTTTACTGTAAATTAAATCGAC
CAATCAGACGAACAAATGTATTTGAACTGCTGTTCGGAAAAGAGCTTGGTGAGTGTATCAAGGAGGCTAAAGGAGAATAT
GCTCACTCGTCATATGAAACACTGCAAAGATTAATTCGTAAAGGAGTGGCACTCGGCTATTTATCAAAAAACACTTATCA
TCGCTGGGTTTATGAAGAAGCGAGTCTCTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

64.689

99.438

0.643

Multiple sequence alignment