Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   AAVC94_RS11260 Genome accession   NZ_CP154906
Coordinates   2222960..2223253 (-) Length   97 a.a.
NCBI ID   WP_212045910.1    Uniprot ID   -
Organism   Bacillus pumilus strain FUA2115     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2217960..2228253
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVC94_RS11210 (AAVC94_11210) sinR 2218123..2218458 (+) 336 WP_012010555.1 transcriptional regulator SinR Regulator
  AAVC94_RS11215 (AAVC94_11215) - 2218526..2219326 (-) 801 WP_253622435.1 TasA family protein -
  AAVC94_RS11220 (AAVC94_11220) - 2219384..2219956 (-) 573 WP_003217306.1 signal peptidase I -
  AAVC94_RS11225 (AAVC94_11225) tapA 2220008..2220535 (-) 528 WP_253622434.1 amyloid fiber anchoring/assembly protein TapA -
  AAVC94_RS11230 (AAVC94_11230) - 2220835..2221113 (+) 279 WP_003217457.1 DUF3889 domain-containing protein -
  AAVC94_RS11235 (AAVC94_11235) - 2221147..2221341 (-) 195 WP_034620826.1 YqzE family protein -
  AAVC94_RS11240 (AAVC94_11240) comGG 2221401..2221784 (-) 384 WP_253622433.1 competence type IV pilus minor pilin ComGG -
  AAVC94_RS11245 (AAVC94_11245) comGF 2221781..2222281 (-) 501 WP_253622432.1 competence type IV pilus minor pilin ComGF -
  AAVC94_RS11250 (AAVC94_11250) comGE 2222220..2222537 (-) 318 WP_003217390.1 competence type IV pilus minor pilin ComGE -
  AAVC94_RS11255 (AAVC94_11255) comGD 2222521..2222967 (-) 447 WP_212045911.1 competence type IV pilus minor pilin ComGD -
  AAVC94_RS11260 (AAVC94_11260) comGC 2222960..2223253 (-) 294 WP_212045910.1 competence type IV pilus major pilin ComGC Machinery gene
  AAVC94_RS11265 (AAVC94_11265) comGB 2223270..2224310 (-) 1041 WP_212045909.1 competence type IV pilus assembly protein ComGB -
  AAVC94_RS11270 (AAVC94_11270) comGA 2224291..2225361 (-) 1071 WP_137054976.1 competence type IV pilus ATPase ComGA Machinery gene
  AAVC94_RS11275 (AAVC94_11275) - 2225539..2226411 (-) 873 WP_003217438.1 STAS domain-containing protein -
  AAVC94_RS11285 (AAVC94_11285) - 2226635..2227015 (-) 381 WP_003217382.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  AAVC94_RS11290 (AAVC94_11290) - 2227228..2227470 (+) 243 WP_003217440.1 DUF2626 domain-containing protein -
  AAVC94_RS11295 (AAVC94_11295) - 2227516..2228154 (-) 639 WP_003217463.1 MBL fold metallo-hydrolase -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10709.71 Da        Isoelectric Point: 7.9308

>NTDB_id=995071 AAVC94_RS11260 WP_212045910.1 2222960..2223253(-) (comGC) [Bacillus pumilus strain FUA2115]
MNDKGFTLLEMLIVMLVISILLLITIPNITRHHQTIQAKGCEGLKSMVSTQVMAYELEHDGKTPSLAELVKEGYVKKGLT
CPNGKAIVIQNGHVKHE

Nucleotide


Download         Length: 294 bp        

>NTDB_id=995071 AAVC94_RS11260 WP_212045910.1 2222960..2223253(-) (comGC) [Bacillus pumilus strain FUA2115]
ATGAATGATAAAGGATTTACTCTGTTAGAAATGTTAATTGTCATGCTTGTGATTTCGATTCTTTTACTGATTACCATTCC
GAATATTACTCGTCACCACCAAACGATTCAAGCAAAGGGCTGTGAAGGGCTTAAATCAATGGTGAGCACTCAGGTGATGG
CATATGAATTAGAGCACGATGGCAAGACACCATCTTTAGCTGAATTAGTAAAAGAAGGCTATGTTAAAAAGGGATTAACG
TGTCCTAATGGAAAAGCGATTGTCATTCAAAACGGCCATGTGAAGCATGAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

68.041

100

0.68
  comGC Staphylococcus aureus MW2

41.304

94.845

0.392
  comGC Staphylococcus aureus N315

41.304

94.845

0.392

Multiple sequence alignment