Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   AAVC94_RS11270 Genome accession   NZ_CP154906
Coordinates   2224291..2225361 (-) Length   356 a.a.
NCBI ID   WP_137054976.1    Uniprot ID   -
Organism   Bacillus pumilus strain FUA2115     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2219291..2230361
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVC94_RS11220 (AAVC94_11220) - 2219384..2219956 (-) 573 WP_003217306.1 signal peptidase I -
  AAVC94_RS11225 (AAVC94_11225) tapA 2220008..2220535 (-) 528 WP_253622434.1 amyloid fiber anchoring/assembly protein TapA -
  AAVC94_RS11230 (AAVC94_11230) - 2220835..2221113 (+) 279 WP_003217457.1 DUF3889 domain-containing protein -
  AAVC94_RS11235 (AAVC94_11235) - 2221147..2221341 (-) 195 WP_034620826.1 YqzE family protein -
  AAVC94_RS11240 (AAVC94_11240) comGG 2221401..2221784 (-) 384 WP_253622433.1 competence type IV pilus minor pilin ComGG -
  AAVC94_RS11245 (AAVC94_11245) comGF 2221781..2222281 (-) 501 WP_253622432.1 competence type IV pilus minor pilin ComGF -
  AAVC94_RS11250 (AAVC94_11250) comGE 2222220..2222537 (-) 318 WP_003217390.1 competence type IV pilus minor pilin ComGE -
  AAVC94_RS11255 (AAVC94_11255) comGD 2222521..2222967 (-) 447 WP_212045911.1 competence type IV pilus minor pilin ComGD -
  AAVC94_RS11260 (AAVC94_11260) comGC 2222960..2223253 (-) 294 WP_212045910.1 competence type IV pilus major pilin ComGC Machinery gene
  AAVC94_RS11265 (AAVC94_11265) comGB 2223270..2224310 (-) 1041 WP_212045909.1 competence type IV pilus assembly protein ComGB -
  AAVC94_RS11270 (AAVC94_11270) comGA 2224291..2225361 (-) 1071 WP_137054976.1 competence type IV pilus ATPase ComGA Machinery gene
  AAVC94_RS11275 (AAVC94_11275) - 2225539..2226411 (-) 873 WP_003217438.1 STAS domain-containing protein -
  AAVC94_RS11285 (AAVC94_11285) - 2226635..2227015 (-) 381 WP_003217382.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  AAVC94_RS11290 (AAVC94_11290) - 2227228..2227470 (+) 243 WP_003217440.1 DUF2626 domain-containing protein -
  AAVC94_RS11295 (AAVC94_11295) - 2227516..2228154 (-) 639 WP_003217463.1 MBL fold metallo-hydrolase -
  AAVC94_RS11300 (AAVC94_11300) - 2228312..2228485 (+) 174 WP_003217333.1 DUF2759 domain-containing protein -
  AAVC94_RS11305 (AAVC94_11305) - 2228511..2228825 (-) 315 WP_345808557.1 MTH1187 family thiamine-binding protein -
  AAVC94_RS11310 (AAVC94_11310) - 2228904..2230157 (-) 1254 WP_345808558.1 MFS transporter -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40351.81 Da        Isoelectric Point: 9.5361

>NTDB_id=995072 AAVC94_RS11270 WP_137054976.1 2224291..2225361(-) (comGA) [Bacillus pumilus strain FUA2115]
MYGIEYLGQELLEEACRMRASDVHIVPKEKKASVSFRVDSDLIQQRTIDKKSGERLIAHFKFLSSMDIGEKRRPQNGSLA
VMLRRGQVFIRMSTLPTVNDESLVIRILPQDHVPKIKHLSLFPKASTRLLSFLNHSHGLILFTGPTNSGKTTTLYSLIQF
AKKNFNRNIITLEDPVETRNEEVLQVQVNEKAGITYAAGLRAILRHDPDMIVLGEIRDAETARTAIRAALTGHLVMSTLH
AKNAKGALYRMLEFGVTMNELEQTMVAIAAQRLIELTCPFCGETCQLYCKLNRPVRRTNVFELLFGKELGECIKEAKGEY
AHSSYETLQRLIRKGVALGYLSKNTYHRWVYEEASL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=995072 AAVC94_RS11270 WP_137054976.1 2224291..2225361(-) (comGA) [Bacillus pumilus strain FUA2115]
TTGTATGGGATTGAATATTTGGGACAAGAGCTGCTAGAAGAAGCATGCCGCATGAGAGCATCTGATGTGCACATTGTTCC
AAAGGAAAAGAAAGCGTCGGTATCTTTCCGCGTAGACTCAGATTTAATTCAGCAGCGAACCATTGATAAAAAAAGCGGCG
AGCGGCTCATTGCTCATTTTAAATTTTTATCATCCATGGATATCGGAGAAAAACGGAGACCGCAAAATGGGTCATTAGCT
GTGATGCTAAGAAGGGGTCAGGTGTTTATTCGGATGTCTACCCTACCAACTGTAAATGATGAGAGCTTAGTGATTAGAAT
ATTGCCGCAGGATCATGTTCCAAAAATAAAACATCTGTCACTATTTCCGAAAGCATCCACCAGGTTATTATCATTTTTGA
ATCATTCGCATGGGCTCATTTTATTTACCGGTCCAACCAATTCAGGGAAAACAACAACCCTTTATTCATTGATCCAGTTT
GCAAAAAAGAATTTCAACAGAAATATTATTACACTTGAAGATCCTGTGGAAACGAGAAATGAAGAAGTGCTGCAGGTTCA
AGTAAATGAAAAAGCCGGTATCACATATGCGGCAGGATTACGCGCTATTTTAAGACATGATCCAGATATGATTGTGCTAG
GAGAAATAAGAGATGCTGAAACGGCTCGAACGGCAATTAGAGCAGCACTGACAGGCCATTTAGTGATGAGTACACTCCAT
GCGAAAAATGCAAAAGGAGCCCTTTATCGTATGCTTGAATTTGGTGTCACGATGAATGAACTCGAACAAACGATGGTGGC
GATTGCTGCGCAGCGATTAATCGAGCTCACCTGTCCTTTTTGCGGAGAAACATGCCAGCTTTACTGTAAATTAAATCGAC
CGGTCAGACGAACAAATGTATTTGAACTGCTGTTCGGAAAGGAGCTTGGTGAGTGTATCAAGGAGGCTAAAGGAGAATAT
GCTCACTCGTCATATGAAACATTGCAAAGATTAATTCGTAAAGGAGTGGCACTAGGCTATTTATCGAAAAACACCTATCA
TCGCTGGGTTTATGAAGAAGCAAGCCTCTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

64.407

99.438

0.64

Multiple sequence alignment