Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   AAVC94_RS11210 Genome accession   NZ_CP154906
Coordinates   2218123..2218458 (+) Length   111 a.a.
NCBI ID   WP_012010555.1    Uniprot ID   -
Organism   Bacillus pumilus strain FUA2115     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2213123..2223458
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVC94_RS11190 (AAVC94_11190) gcvT 2213600..2214697 (-) 1098 WP_050943769.1 glycine cleavage system aminomethyltransferase GcvT -
  AAVC94_RS11195 (AAVC94_11195) - 2215260..2216930 (+) 1671 WP_106029151.1 SNF2-related protein -
  AAVC94_RS11200 (AAVC94_11200) - 2216945..2217742 (+) 798 WP_253622436.1 YqhG family protein -
  AAVC94_RS11205 (AAVC94_11205) - 2217925..2218089 (+) 165 WP_003217357.1 anti-repressor SinI family protein -
  AAVC94_RS11210 (AAVC94_11210) sinR 2218123..2218458 (+) 336 WP_012010555.1 transcriptional regulator SinR Regulator
  AAVC94_RS11215 (AAVC94_11215) - 2218526..2219326 (-) 801 WP_253622435.1 TasA family protein -
  AAVC94_RS11220 (AAVC94_11220) - 2219384..2219956 (-) 573 WP_003217306.1 signal peptidase I -
  AAVC94_RS11225 (AAVC94_11225) tapA 2220008..2220535 (-) 528 WP_253622434.1 amyloid fiber anchoring/assembly protein TapA -
  AAVC94_RS11230 (AAVC94_11230) - 2220835..2221113 (+) 279 WP_003217457.1 DUF3889 domain-containing protein -
  AAVC94_RS11235 (AAVC94_11235) - 2221147..2221341 (-) 195 WP_034620826.1 YqzE family protein -
  AAVC94_RS11240 (AAVC94_11240) comGG 2221401..2221784 (-) 384 WP_253622433.1 competence type IV pilus minor pilin ComGG -
  AAVC94_RS11245 (AAVC94_11245) comGF 2221781..2222281 (-) 501 WP_253622432.1 competence type IV pilus minor pilin ComGF -
  AAVC94_RS11250 (AAVC94_11250) comGE 2222220..2222537 (-) 318 WP_003217390.1 competence type IV pilus minor pilin ComGE -
  AAVC94_RS11255 (AAVC94_11255) comGD 2222521..2222967 (-) 447 WP_212045911.1 competence type IV pilus minor pilin ComGD -
  AAVC94_RS11260 (AAVC94_11260) comGC 2222960..2223253 (-) 294 WP_212045910.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 13001.59 Da        Isoelectric Point: 5.2831

>NTDB_id=995070 AAVC94_RS11210 WP_012010555.1 2218123..2218458(+) (sinR) [Bacillus pumilus strain FUA2115]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLHEKDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWRKKQEEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=995070 AAVC94_RS11210 WP_012010555.1 2218123..2218458(+) (sinR) [Bacillus pumilus strain FUA2115]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTACACGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAGAAAAAA
GCAAGAAGAGGAGTAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(74-101)

Helix-turn-helix (HTH_3)

(6-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

94.595

100

0.946

Multiple sequence alignment