Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   AAVC94_RS11025 Genome accession   NZ_CP154906
Coordinates   2185954..2187690 (-) Length   578 a.a.
NCBI ID   WP_050943778.1    Uniprot ID   -
Organism   Bacillus pumilus strain FUA2115     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2180954..2192690
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVC94_RS11010 (AAVC94_11010) - 2181832..2182932 (-) 1101 WP_212045926.1 Rap family tetratricopeptide repeat protein -
  AAVC94_RS11015 (AAVC94_11015) spo0A 2183389..2184192 (-) 804 WP_003215740.1 sporulation transcription factor Spo0A Regulator
  AAVC94_RS11020 (AAVC94_11020) spoIVB 2184478..2185755 (-) 1278 WP_106033130.1 SpoIVB peptidase -
  AAVC94_RS11025 (AAVC94_11025) recN 2185954..2187690 (-) 1737 WP_050943778.1 DNA repair protein RecN Machinery gene
  AAVC94_RS11030 (AAVC94_11030) argR 2187724..2188173 (-) 450 WP_003215836.1 transcriptional regulator ArgR -
  AAVC94_RS11035 (AAVC94_11035) - 2188333..2189187 (-) 855 WP_137054989.1 TlyA family RNA methyltransferase -
  AAVC94_RS11040 (AAVC94_11040) dxs 2189184..2191085 (-) 1902 WP_137054988.1 1-deoxy-D-xylulose-5-phosphate synthase -
  AAVC94_RS11045 (AAVC94_11045) - 2191236..2192126 (-) 891 WP_113387134.1 polyprenyl synthetase family protein -
  AAVC94_RS11050 (AAVC94_11050) - 2192116..2192376 (-) 261 WP_003215880.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 64820.62 Da        Isoelectric Point: 4.7788

>NTDB_id=995069 AAVC94_RS11025 WP_050943778.1 2185954..2187690(-) (recN) [Bacillus pumilus strain FUA2115]
MLAELTIKNFAIIEELTVSFEKGLTVLTGETGAGKSIMIDAVSLLVGGRGSSEFVRYGEKKAELEGLFLVPAADHPVFAL
CEEQGIDATDEMMILRRDMNNNGKSICRINGKLVTISLLREVGRLLLDIHGQHDNQLLMEDENHLHLLDQFGAEEIAPAL
SQYQEAYEQYTKTAQKLKQLSENEQEMVHRLDLLQFQLEEIEAAQLEPGEDEKLQEERHQISNYEKIFSSLQNAYNALRN
EQGGLDWVGMSSSELEQVSEINDDLKKLSEQVSNSYYLLEDSTFQMRSMLDQLEFDPARLDFIESRLNEMKQLKRKYGTT
VEEILEYAAKIEEEIDQIQNRDSHLQTLKNKLDAMSRDALLEALNVSELRKKWAKKLAKQIQTELKDLYMEKSTFDTSFS
IRYAPFSSTDNPLLDGKPVQLGKNGIDQAQFVISTNPGEPMKSLSKVASGGEISRVMLAVKSIFSAKQEVTSIIFDEVDT
GVSGRVAQAIAEKIYKVAAGSQVLCITHLPQVAAMADTHLFISKRSKAGRTLTSVKPLSHEEKVSEIGRMIAGVEVTELT
KQHAKELLHQANDVKTTG

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=995069 AAVC94_RS11025 WP_050943778.1 2185954..2187690(-) (recN) [Bacillus pumilus strain FUA2115]
GTGTTAGCAGAACTAACCATTAAAAACTTTGCAATCATTGAAGAGTTAACAGTTTCATTTGAAAAAGGACTCACAGTCCT
AACAGGGGAAACAGGTGCAGGGAAATCCATCATGATTGATGCTGTCTCACTTCTTGTGGGAGGTAGAGGGTCGTCTGAAT
TTGTTCGTTATGGTGAGAAAAAGGCTGAGCTGGAGGGGCTTTTTCTTGTACCAGCAGCTGACCACCCTGTATTTGCTTTA
TGCGAAGAGCAGGGAATTGACGCAACGGATGAAATGATGATTCTTCGCCGTGATATGAACAATAACGGGAAAAGCATATG
CCGCATCAATGGCAAGCTCGTTACAATCTCACTTTTACGCGAAGTAGGACGCCTTTTGCTCGATATACATGGACAGCACG
ATAACCAGTTATTGATGGAGGATGAAAATCATCTGCATTTACTCGATCAATTTGGAGCAGAAGAAATTGCACCTGCTCTG
TCACAGTATCAAGAAGCATATGAGCAATATACAAAGACAGCCCAAAAGCTAAAACAGCTCTCTGAGAATGAGCAGGAAAT
GGTGCACCGGTTAGATTTACTGCAATTTCAGCTAGAAGAGATTGAAGCGGCACAATTAGAGCCGGGAGAAGATGAGAAGC
TTCAAGAAGAGCGCCATCAGATCAGCAACTACGAAAAAATCTTTTCCTCACTCCAAAACGCCTATAATGCCTTGCGCAAT
GAGCAGGGGGGACTTGATTGGGTTGGCATGTCATCGAGCGAGCTCGAGCAGGTTTCTGAGATCAACGACGATCTGAAAAA
GCTATCAGAACAAGTGTCGAACTCTTACTATTTATTAGAGGATTCGACGTTCCAAATGCGAAGCATGCTGGATCAATTAG
AGTTCGACCCAGCACGTCTTGATTTTATTGAGTCTAGGCTGAATGAAATGAAGCAGTTAAAACGAAAGTACGGGACAACG
GTTGAGGAAATTTTGGAGTATGCGGCGAAGATTGAAGAAGAAATCGATCAAATTCAAAATCGAGACAGTCACTTGCAGAC
GCTCAAAAACAAACTGGATGCAATGAGCCGTGACGCCCTGCTTGAAGCACTTAACGTTTCGGAGCTTCGTAAAAAATGGG
CCAAAAAGCTAGCGAAGCAAATTCAAACAGAACTAAAGGATTTGTATATGGAAAAATCAACGTTTGATACATCCTTTTCC
ATTCGGTATGCGCCTTTTAGCAGCACGGATAATCCGCTGCTAGATGGAAAGCCCGTCCAGCTTGGAAAAAACGGAATCGA
CCAAGCTCAATTTGTGATTTCTACTAATCCTGGCGAACCGATGAAATCTTTATCAAAAGTTGCCTCGGGTGGAGAAATTT
CACGTGTTATGCTCGCCGTGAAAAGTATCTTCTCGGCCAAACAAGAAGTCACTTCCATTATTTTCGATGAGGTCGATACG
GGCGTAAGCGGCAGAGTTGCACAGGCGATTGCCGAAAAAATTTACAAAGTGGCGGCTGGCTCACAAGTGCTCTGCATTAC
GCACCTCCCGCAAGTAGCAGCAATGGCTGACACGCACCTCTTCATTTCTAAACGCTCTAAAGCAGGCAGAACACTGACAA
GCGTCAAACCATTAAGTCATGAAGAAAAAGTGAGTGAAATTGGCAGGATGATTGCGGGTGTGGAAGTCACTGAACTGACA
AAACAGCACGCAAAAGAATTGCTGCATCAAGCAAATGATGTCAAAACAACAGGGTAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

74.913

100

0.749

Multiple sequence alignment