Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   AAVB98_RS17300 Genome accession   NZ_CP154895
Coordinates   3287054..3287389 (-) Length   111 a.a.
NCBI ID   WP_014470659.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain Fad 77     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 3282054..3292389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVB98_RS17250 (AAVB98_17250) comGC 3282247..3282555 (+) 309 WP_013352870.1 competence type IV pilus major pilin ComGC Machinery gene
  AAVB98_RS17255 (AAVB98_17255) comGD 3282545..3282982 (+) 438 WP_013352869.1 competence type IV pilus minor pilin ComGD Machinery gene
  AAVB98_RS17260 (AAVB98_17260) comGE 3282966..3283280 (+) 315 WP_014470662.1 competence type IV pilus minor pilin ComGE Machinery gene
  AAVB98_RS17265 (AAVB98_17265) comGF 3283189..3283689 (+) 501 WP_013352868.1 competence type IV pilus minor pilin ComGF -
  AAVB98_RS17270 (AAVB98_17270) comGG 3283691..3284068 (+) 378 WP_013352867.1 competence type IV pilus minor pilin ComGG Machinery gene
  AAVB98_RS17275 (AAVB98_17275) - 3284122..3284301 (+) 180 WP_013352866.1 YqzE family protein -
  AAVB98_RS17280 (AAVB98_17280) - 3284342..3284671 (-) 330 WP_013352865.1 DUF3889 domain-containing protein -
  AAVB98_RS17285 (AAVB98_17285) tapA 3284929..3285600 (+) 672 WP_013352864.1 amyloid fiber anchoring/assembly protein TapA -
  AAVB98_RS17290 (AAVB98_17290) - 3285572..3286156 (+) 585 WP_013352863.1 signal peptidase I -
  AAVB98_RS17295 (AAVB98_17295) - 3286221..3287006 (+) 786 WP_013352862.1 TasA family protein -
  AAVB98_RS17300 (AAVB98_17300) sinR 3287054..3287389 (-) 336 WP_014470659.1 transcriptional regulator SinR Regulator
  AAVB98_RS17305 (AAVB98_17305) sinI 3287423..3287596 (-) 174 WP_013352860.1 anti-repressor SinI family protein Regulator
  AAVB98_RS17310 (AAVB98_17310) - 3287776..3288570 (-) 795 WP_013352859.1 YqhG family protein -
  AAVB98_RS17315 (AAVB98_17315) - 3288591..3290261 (-) 1671 WP_014470658.1 SNF2-related protein -
  AAVB98_RS17320 (AAVB98_17320) gcvT 3290685..3291785 (+) 1101 WP_013352857.1 glycine cleavage system aminomethyltransferase GcvT -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12986.67 Da        Isoelectric Point: 7.2026

>NTDB_id=994810 AAVB98_RS17300 WP_014470659.1 3287054..3287389(-) (sinR) [Bacillus amyloliquefaciens strain Fad 77]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLEYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=994810 AAVB98_RS17300 WP_014470659.1 3287054..3287389(-) (sinR) [Bacillus amyloliquefaciens strain Fad 77]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTAGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACATTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGAATATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

98.198

100

0.982

Multiple sequence alignment