Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   AAVD18_RS20980 Genome accession   NZ_CP154893
Coordinates   4011007..4011798 (+) Length   263 a.a.
NCBI ID   WP_013351434.1    Uniprot ID   A0AAP7TA01
Organism   Bacillus amyloliquefaciens strain Fad 11/2     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 4006007..4016798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVD18_RS20955 (AAVD18_20955) - 4008004..4008888 (+) 885 WP_013351430.1 PhzF family phenazine biosynthesis isomerase -
  AAVD18_RS20960 (AAVD18_20960) - 4008965..4009549 (+) 585 WP_013351431.1 nitroreductase -
  AAVD18_RS20965 (AAVD18_20965) - 4009586..4009777 (-) 192 WP_013351432.1 YfhD family protein -
  AAVD18_RS20970 (AAVD18_20970) - 4009848..4009958 (-) 111 WP_003223230.1 YfhE family protein -
  AAVD18_RS20975 (AAVD18_20975) - 4010016..4010915 (-) 900 WP_013351433.1 TIGR01777 family oxidoreductase -
  AAVD18_RS20980 (AAVD18_20980) recX 4011007..4011798 (+) 792 WP_013351434.1 recombination regulator RecX Regulator
  AAVD18_RS20985 (AAVD18_20985) - 4011805..4012119 (+) 315 WP_013351435.1 YfhH family protein -
  AAVD18_RS20990 (AAVD18_20990) - 4012367..4013455 (+) 1089 WP_232469729.1 MFS transporter -
  AAVD18_RS20995 (AAVD18_20995) - 4013494..4013886 (-) 393 WP_013351437.1 DUF2606 family protein -
  AAVD18_RS21000 (AAVD18_21000) - 4013849..4014763 (-) 915 WP_061573696.1 serine protease -
  AAVD18_RS21005 (AAVD18_21005) - 4014900..4015052 (-) 153 WP_003155495.1 small, acid-soluble spore protein K -
  AAVD18_RS21010 (AAVD18_21010) - 4015176..4015445 (+) 270 WP_061573695.1 YfhJ family protein -
  AAVD18_RS21015 (AAVD18_21015) - 4015577..4016104 (+) 528 WP_013351440.1 SH3 domain-containing protein -
  AAVD18_RS21020 (AAVD18_21020) - 4016190..4016525 (+) 336 WP_061573694.1 SdpI family protein -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 31009.23 Da        Isoelectric Point: 6.2753

>NTDB_id=994742 AAVD18_RS20980 WP_013351434.1 4011007..4011798(+) (recX) [Bacillus amyloliquefaciens strain Fad 11/2]
MPFITKISTQKKNTERFNIFLDEKYAFSVDADVLVRFDLKKGKELDELDILEISHGDEVKKAFNRAVEFLSYRMRSEKEV
RDHLKKKETPEMVISEVIHKLYDYRYLNDKEFAEAYASTHKKTNGKGPDVLFRELKAKGIDDDTIKETLSAFTFDEQIQE
ALKHIGKILKKDKKLSTKEIRQRAQMQLQRKGFPFDVINAALEQTEYENDDEAEMEALKTHAEKAIRKYRYDGSYESGMK
VKQYLFRKGFSIDDIEQFLQEEE

Nucleotide


Download         Length: 792 bp        

>NTDB_id=994742 AAVD18_RS20980 WP_013351434.1 4011007..4011798(+) (recX) [Bacillus amyloliquefaciens strain Fad 11/2]
ATGCCGTTTATTACAAAAATATCGACCCAAAAGAAAAATACCGAACGCTTCAACATCTTCCTTGATGAGAAATATGCATT
CAGCGTCGACGCCGACGTGCTTGTTCGTTTTGACCTGAAAAAAGGGAAAGAACTGGACGAGCTTGACATTCTTGAAATCA
GTCACGGCGATGAAGTGAAAAAAGCCTTTAACCGCGCCGTCGAATTTTTATCATACCGGATGCGCTCTGAAAAAGAAGTC
CGGGACCATTTGAAAAAAAAAGAAACACCTGAGATGGTTATTTCTGAAGTCATCCACAAACTGTACGATTACCGCTACTT
AAATGACAAAGAATTTGCCGAAGCCTATGCGAGCACCCACAAAAAAACAAACGGCAAAGGGCCTGACGTCCTGTTTCGCG
AGCTGAAAGCGAAAGGAATAGACGACGATACCATTAAGGAGACGCTCAGTGCGTTTACGTTTGATGAGCAGATACAGGAA
GCGCTGAAACATATCGGAAAAATCCTGAAAAAAGACAAAAAGCTGTCCACAAAAGAGATCAGACAGCGGGCCCAGATGCA
GCTTCAGCGAAAAGGCTTCCCTTTCGACGTCATCAATGCCGCTCTGGAGCAGACGGAGTATGAGAATGATGACGAAGCTG
AGATGGAAGCTTTGAAGACTCATGCGGAAAAAGCAATCAGGAAATACCGCTATGACGGCAGCTATGAAAGCGGAATGAAG
GTCAAGCAGTACTTATTCAGAAAAGGATTCTCGATTGACGACATTGAACAATTTTTGCAGGAAGAGGAGTAA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

79.468

100

0.795

Multiple sequence alignment