Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   EW030_RS08185 Genome accession   NZ_LR130511
Coordinates   1638230..1638916 (-) Length   228 a.a.
NCBI ID   WP_000692871.1    Uniprot ID   -
Organism   Staphylococcus aureus strain BPH2819 isolate BPH2819     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1633230..1643916
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EW030_RS08140 rpmA 1634001..1634285 (-) 285 WP_000916187.1 50S ribosomal protein L27 -
  EW030_RS08145 - 1634297..1634617 (-) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  EW030_RS08150 rplU 1634623..1634931 (-) 309 WP_000457386.1 50S ribosomal protein L21 -
  EW030_RS08155 mreD 1635167..1635697 (-) 531 WP_001259925.1 rod shape-determining protein MreD -
  EW030_RS08160 mreC 1635697..1636539 (-) 843 WP_000911041.1 rod shape-determining protein MreC -
  EW030_RS08165 - 1636738..1636857 (-) 120 WP_000840602.1 hypothetical protein -
  EW030_RS08170 - 1636931..1637404 (-) 474 WP_001236734.1 DUF4930 family protein -
  EW030_RS08175 - 1637564..1637761 (+) 198 WP_000025835.1 hypothetical protein -
  EW030_RS08180 - 1637878..1638162 (-) 285 WP_000171859.1 hypothetical protein -
  EW030_RS08185 ysxA/radC 1638230..1638916 (-) 687 WP_000692871.1 RadC family protein Machinery gene
  EW030_RS08190 - 1638913..1639620 (-) 708 WP_000261115.1 prepilin peptidase -
  EW030_RS08200 - 1639890..1641161 (-) 1272 WP_001108346.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  EW030_RS08205 - 1641174..1643804 (-) 2631 WP_000425353.1 valine--tRNA ligase -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25325.31 Da        Isoelectric Point: 7.0540

>NTDB_id=994712 EW030_RS08185 WP_000692871.1 1638230..1638916(-) (ysxA/radC) [Staphylococcus aureus strain BPH2819 isolate BPH2819]
MKIKEMVTSEMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLIKVKGIGLQKAI
TLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILLLNSKNVVIKETCVFKGTLNSSIVHPREIFSI
AVRENANAIIAVHNHPSGDVTPSQEDIITTMRLKECGLILGIDLLEHIIIGDNRFTSLVEAGYFDEND

Nucleotide


Download         Length: 687 bp        

>NTDB_id=994712 EW030_RS08185 WP_000692871.1 1638230..1638916(-) (ysxA/radC) [Staphylococcus aureus strain BPH2819 isolate BPH2819]
TTGAAAATTAAAGAAATGGTAACTTCAGAAATGCCAAGAGAACGTTTGTTAAGCCATGGTGCAAAAAGTCTTTCGAATAC
AGAATTATTAGCTATATTAATTAACACCGGAAGAAAAGGATTCTCGAGCATAGACATTAGTAATGAACTGCTTAAATCTG
CTTCGAATCTGAATGAATTGAAAAAATCTTCAATTAACGATTTGATAAAAGTTAAAGGGATTGGATTACAAAAAGCAATT
ACTTTAAAAGCAGCATTTGAGTTAGGGGAAAGGATGGGGAGAAGAGCTGAAAATAATCGTATAAAAATAACGCAACCAAG
TGATGTTGCTGATTATATGATTCCAACAATGAAAGATTTAACACAAGAACATTTTGTCATTTTATTGTTAAATTCAAAAA
ATGTAGTGATTAAAGAAACCTGTGTTTTTAAAGGTACATTAAATAGTTCGATTGTACATCCACGTGAAATTTTTAGTATT
GCGGTGAGAGAAAATGCCAATGCAATCATCGCAGTTCATAATCATCCATCCGGTGATGTAACGCCCTCACAAGAAGATAT
CATAACAACAATGAGGTTGAAGGAGTGTGGTTTGATTTTAGGGATAGATTTATTGGAGCATATTATAATCGGTGATAATA
GATTTACCAGTCTTGTAGAAGCGGGTTACTTTGATGAAAATGATTGA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(3-80)

RadC-like JAB domain (RadC)

(103-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

52.232

98.246

0.513
  radC Streptococcus gordonii str. Challis substr. CH1

39.45

95.614

0.377
  radC Streptococcus pneumoniae TIGR4

40.566

92.982

0.377
  radC Streptococcus pneumoniae R6

40.094

92.982

0.373
  radC Streptococcus pneumoniae D39

40.094

92.982

0.373