Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QUD34_RS04085 Genome accession   NZ_AP027079
Coordinates   894157..894630 (+) Length   157 a.a.
NCBI ID   WP_286355326.1    Uniprot ID   -
Organism   Geothrix oryzae strain Red222     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 889157..899630
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUD34_RS04065 (GETHOR_07890) - 889205..892018 (+) 2814 WP_286355322.1 serine/threonine-protein kinase -
  QUD34_RS04070 (GETHOR_07900) - 892050..892346 (-) 297 WP_286355323.1 hypothetical protein -
  QUD34_RS04075 (GETHOR_07910) - 892450..893238 (-) 789 WP_286355324.1 enoyl-CoA hydratase/isomerase family protein -
  QUD34_RS04080 (GETHOR_07920) - 893323..894057 (-) 735 WP_286355325.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  QUD34_RS04085 (GETHOR_07930) ssb 894157..894630 (+) 474 WP_286355326.1 single-stranded DNA-binding protein Machinery gene
  QUD34_RS04090 (GETHOR_07940) - 894696..897371 (-) 2676 WP_286355327.1 M56 family metallopeptidase -
  QUD34_RS04095 (GETHOR_07950) - 897368..897754 (-) 387 WP_286355328.1 BlaI/MecI/CopY family transcriptional regulator -
  QUD34_RS04100 (GETHOR_07960) - 897981..899606 (+) 1626 WP_286355329.1 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16873.73 Da        Isoelectric Point: 6.4716

>NTDB_id=99471 QUD34_RS04085 WP_286355326.1 894157..894630(+) (ssb) [Geothrix oryzae strain Red222]
MSGSLNKVLLIGNLGRDPELKATPSGQSVARFSVATTETWKNQAGEKQSKTEWHNIVVWGKQAEIAEKYLRKGKQVMIEG
RIQYREYTDQAGVKKTACDIRCDNFVMLGRMEDGGTRDSGGYGGRASGGGSQDFEDHGAPSPAGGGGGSFPDDDIPF

Nucleotide


Download         Length: 474 bp        

>NTDB_id=99471 QUD34_RS04085 WP_286355326.1 894157..894630(+) (ssb) [Geothrix oryzae strain Red222]
ATGTCCGGATCCTTGAACAAAGTGCTGCTCATCGGCAACCTCGGGCGCGATCCTGAGCTGAAGGCCACCCCCTCGGGCCA
GAGCGTCGCCCGGTTCTCCGTGGCCACCACGGAAACATGGAAGAACCAGGCCGGGGAGAAGCAGAGCAAGACCGAATGGC
ACAACATCGTGGTGTGGGGCAAGCAGGCCGAGATCGCCGAGAAGTACCTGCGCAAGGGCAAGCAGGTGATGATCGAGGGC
CGCATCCAGTACCGCGAATACACCGACCAGGCCGGCGTGAAGAAGACCGCCTGCGACATCCGCTGCGACAACTTCGTCAT
GCTTGGCCGCATGGAGGATGGCGGCACCCGCGATTCCGGCGGCTACGGCGGCCGCGCCTCCGGCGGCGGCTCCCAGGACT
TCGAGGATCACGGCGCCCCCAGCCCGGCCGGCGGTGGCGGCGGCAGCTTCCCCGATGACGACATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria meningitidis MC58

43.931

100

0.484
  ssb Neisseria gonorrhoeae MS11

43.931

100

0.484
  ssb Vibrio cholerae strain A1552

39.535

100

0.433
  ssb Glaesserella parasuis strain SC1401

39.073

96.178

0.376

Multiple sequence alignment