Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   EW022_RS03565 Genome accession   NZ_LR130240
Coordinates   696964..697926 (+) Length   320 a.a.
NCBI ID   WP_002995771.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain PS006 isolate PS006     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 691964..702926
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EW022_RS03540 - 691969..692559 (+) 591 WP_002989185.1 serine hydrolase -
  EW022_RS03545 - 692673..693893 (-) 1221 WP_002989189.1 DUF3114 domain-containing protein -
  EW022_RS03550 queA 693900..694928 (-) 1029 WP_011284937.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  EW022_RS03555 nagB 695130..695834 (+) 705 WP_021340997.1 glucosamine-6-phosphate deaminase -
  EW022_RS03560 - 695953..696669 (+) 717 WP_002989197.1 pseudouridine synthase -
  EW022_RS03565 coiA 696964..697926 (+) 963 WP_002995771.1 competence protein CoiA Machinery gene
  EW022_RS03570 pepF 697939..699744 (+) 1806 WP_011054652.1 oligoendopeptidase F Regulator
  EW022_RS03575 - 700120..701316 (+) 1197 WP_002995765.1 OFA family MFS transporter -
  EW022_RS03580 - 701382..702089 (+) 708 WP_011284934.1 O-methyltransferase -

Sequence

Protein


Download         Length: 320 a.a.        Molecular weight: 37748.20 Da        Isoelectric Point: 10.2013

>NTDB_id=994516 EW022_RS03565 WP_002995771.1 696964..697926(+) (coiA) [Streptococcus pyogenes strain PS006 isolate PS006]
MTKILTALDGKNQLISLVTQPISTKPPFCCPACKSPVRLRQGTIRRPHFAHVQLAHCQFQAENESEEHLTLKAKLYTSLV
RTEAVCIEKYLPELQQIADLWVNDKLALEIQCSPLPVERLKKRTKAYQEKGYPVRWLLGRKLWLNTHLTALQKQFLYFSS
SLGFHLWELDAAANLLRLKYLIHEDLFGKVSYLTKTISLDHNIMEMFRLPYQQEILYSYQKKMTVNLSKRIQRALLARHP
KWLRRQEKAYLSGYNLLMLTTDAFYPQWRPVQSSSGFCQIKGNLRPYYESFKVYYKKEKDKKVQTLFSPKYYVKMDSNRK

Nucleotide


Download         Length: 963 bp        

>NTDB_id=994516 EW022_RS03565 WP_002995771.1 696964..697926(+) (coiA) [Streptococcus pyogenes strain PS006 isolate PS006]
GTGACAAAAATATTAACCGCTTTAGATGGTAAGAATCAGCTCATTTCGCTAGTAACTCAGCCTATTTCAACGAAACCGCC
TTTTTGTTGCCCAGCTTGCAAATCTCCTGTTCGCTTGCGTCAGGGGACAATTAGACGACCTCATTTTGCCCATGTACAAC
TAGCTCATTGTCAATTCCAAGCAGAAAATGAATCTGAGGAACATTTGACGTTGAAGGCAAAACTTTACACCAGTTTAGTC
CGAACAGAAGCTGTCTGTATTGAAAAATATCTTCCTGAGCTGCAACAGATAGCAGACCTTTGGGTGAATGATAAGTTAGC
CTTAGAAATTCAGTGCAGTCCCTTGCCAGTGGAGCGTCTAAAGAAACGCACCAAAGCCTATCAAGAAAAGGGGTATCCGG
TACGATGGTTACTGGGAAGAAAATTGTGGCTTAACACTCACTTAACTGCTTTGCAAAAACAGTTTCTTTACTTTTCATCT
AGTTTGGGCTTTCATTTGTGGGAGCTGGATGCAGCTGCAAATCTGCTACGTCTCAAATATTTAATCCATGAAGACTTATT
TGGTAAGGTAAGTTATCTAACCAAAACCATTTCTTTAGACCACAATATTATGGAAATGTTTCGATTACCCTATCAGCAAG
AAATCCTTTATTCTTATCAGAAAAAAATGACTGTGAACCTATCTAAAAGAATACAAAGAGCTCTTTTAGCTAGACACCCG
AAATGGCTACGACGACAAGAAAAGGCTTACTTATCAGGCTATAATTTACTTATGTTAACAACTGATGCTTTTTATCCTCA
ATGGAGACCAGTTCAATCTTCCAGCGGTTTTTGTCAAATTAAAGGAAATCTTCGCCCTTATTATGAAAGTTTTAAAGTCT
ATTATAAAAAAGAAAAGGATAAGAAGGTGCAAACGCTTTTTTCACCAAAATATTATGTTAAAATGGATAGTAATAGAAAA
TGA

Domains

Predicted by InterProScan.

Competence protein CoiA-like family (CoiA_nuc)

(19-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

42.903

96.875

0.416
  coiA Streptococcus pneumoniae Rx1

41.613

96.875

0.403
  coiA Streptococcus pneumoniae D39

41.613

96.875

0.403
  coiA Streptococcus pneumoniae R6

41.613

96.875

0.403
  coiA Streptococcus pneumoniae TIGR4

41.613

96.875

0.403
  coiA Lactococcus lactis subsp. cremoris KW2

39.329

100

0.403