Detailed information NTG0994316

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: AAG092_RS03630
• Genome accession: NZ_CP154874
• Coordinates: 756364..758589 (-)
• Length: 741 a.a.
• NCBI ID: WP_373388586.1
• Uniprot ID: -
• Organism: Pseudomonas alcaligenes strain Med1
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 751364..763589

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAG092_RS03595 (AAG092_03575)	murB	751725..752744 (-)	1020	WP_373388581.1	UDP-N-acetylmuramate dehydrogenase	-
AAG092_RS03600 (AAG092_03580)	-	752741..753205 (-)	465	WP_373388582.1	low molecular weight protein-tyrosine-phosphatase	-
AAG092_RS03605 (AAG092_03585)	kdsB	753205..753969 (-)	765	WP_373388583.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
AAG092_RS03610 (AAG092_03590)	-	753970..754155 (-)	186	WP_068826273.1	Trm112 family protein	-
AAG092_RS03615 (AAG092_03595)	lpxK	754194..755198 (-)	1005	WP_373388584.1	tetraacyldisaccharide 4'-kinase	-
AAG092_RS03620 (AAG092_03600)	-	755195..755623 (-)	429	WP_110682580.1	biopolymer transporter ExbD	-
AAG092_RS03625 (AAG092_03605)	exbB	755620..756291 (-)	672	WP_373388585.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
AAG092_RS03630 (AAG092_03610)	comA	756364..758589 (-)	2226	WP_373388586.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
AAG092_RS03635 (AAG092_03615)	-	758687..759214 (+)	528	WP_373388587.1	DUF2062 domain-containing protein	-
AAG092_RS03640 (AAG092_03620)	-	759254..760498 (-)	1245	WP_373388588.1	lipoprotein-releasing ABC transporter permease subunit	-
AAG092_RS03645 (AAG092_03625)	lolD	760500..761183 (-)	684	WP_203791975.1	lipoprotein-releasing ABC transporter ATP-binding protein LolD	-
AAG092_RS03650 (AAG092_03630)	-	761176..762426 (-)	1251	WP_373388589.1	lipoprotein-releasing ABC transporter permease subunit	-
AAG092_RS03655 (AAG092_03635)	-	762525..763100 (+)	576	WP_110682587.1	PilZ domain-containing protein	-
AAG092_RS03660 (AAG092_03640)	-	763097..763399 (+)	303	WP_373388590.1	phosphodiesterase	-

Sequence

Protein

• Length: 741 a.a.
• Molecular weight: 80154.43 Da
• Isoelectric Point: 9.9243

>NTDB_id=994316 AAG092_RS03630 WP_373388586.1 756364..758589(-) (comA) [Pseudomonas alcaligenes strain Med1]
MRKGMFALAAGLASLPLLPALPPTWLLLALLPLALMLLPWRSHPVSFFLLGFVWACFSAQSALDDRLAVELDGRTLWLEG
RVSGLPEVAAGVVRFQLEDATARAHRLPARMRLAWYDGPPLLAGERWRLAVKLKRPRGLVNPQGFDYEAWLLAQRIGASG
TVKAGERLRPASGPAAWRDALRQRLLAVEAFGRAGGLAALVLGDDSGLSRADWQVLQDTGTVHLLVISGQHVALLAALLY
GLVAGLARLGLWPRALPWLPWACALAFAGALGYGLLAGFEVPVRRACVMVALVLLWRLRFRHLGLWWPLLLAFVLVLLVE
PLASLQAGFWLSFGAVAVLAWVFGGRLGTWSWWRVWWRAQWTLALGLLPLFFALGLPLSLSGPLANLLAVPWVSLLVVPL
ALLGTLLLPVPWLGEGLLWLAGGLLELLFQTLAWIAAMLPAWLPTAVPLWCWLLGSLGVLLCLLPAGVPLRGFGLVMLLA
VLLPPRERIPAGQAEVWQLDVGQGLAVLVRTREHVLLYDAGPRFGDFDLGERVVLPSLRQLGVGRLDLLLLSHADSDHAG
GAGAVVRGMAVGRVLSGEAAVLPEALQAGACVDGASWEWDGVRFTTWRWSAAQAGNQASCLLKVAAAGEALLLTGDIDEA
AERALMAAGRDLRADWLQVPHHGSRSSSSGAFLDAVAPRGALLSRGWHNPFGHPHPRVVARYEARDIALHDSAELGAIRL
VLGAGEGIAAWRERPRFWREK

Nucleotide

• Length: 2226 bp

>NTDB_id=994316 AAG092_RS03630 WP_373388586.1 756364..758589(-) (comA) [Pseudomonas alcaligenes strain Med1]
ATGCGCAAGGGAATGTTCGCGCTGGCGGCGGGGCTGGCCAGCCTGCCGCTGTTGCCGGCGCTGCCGCCGACCTGGCTGCT
GCTGGCGTTGCTGCCGCTGGCGCTGATGCTGTTGCCCTGGCGCAGTCATCCGGTCTCCTTTTTTCTGCTCGGCTTCGTCT
GGGCCTGCTTCAGTGCGCAGTCGGCCCTGGATGATCGCCTTGCCGTGGAGCTCGATGGCCGCACCCTGTGGCTGGAGGGA
CGGGTCAGCGGGTTGCCGGAAGTCGCTGCGGGCGTGGTGCGCTTCCAGCTGGAAGACGCGACCGCACGGGCGCACCGCCT
GCCCGCGCGCATGCGCCTGGCCTGGTACGACGGACCGCCGCTGCTGGCCGGAGAGCGCTGGCGCCTGGCGGTCAAGCTCA
AGCGTCCGCGGGGCCTGGTCAACCCACAGGGCTTTGATTACGAGGCCTGGCTGCTGGCGCAGCGCATCGGCGCCAGCGGC
ACGGTCAAGGCCGGCGAGCGCCTGCGCCCGGCCTCGGGGCCGGCTGCCTGGCGCGATGCGCTGCGCCAGCGCCTGCTCGC
CGTCGAGGCGTTCGGCCGCGCCGGCGGCCTGGCGGCGCTGGTGCTGGGCGACGACTCCGGGCTCAGTCGGGCTGACTGGC
AGGTGCTGCAGGACACCGGCACGGTGCACCTGCTGGTGATCTCCGGCCAGCACGTGGCGCTGCTGGCGGCGCTGCTCTAC
GGCCTGGTTGCCGGGTTGGCGCGGCTCGGGCTGTGGCCGCGGGCGCTGCCCTGGTTGCCCTGGGCCTGCGCCCTGGCCTT
CGCCGGGGCGCTGGGCTATGGCCTGCTGGCCGGCTTCGAGGTGCCGGTGCGCCGTGCCTGCGTGATGGTCGCCCTGGTGC
TGCTGTGGCGCCTGCGTTTCCGCCACCTGGGCCTGTGGTGGCCGCTGCTGCTGGCCTTCGTGCTGGTGCTGCTGGTCGAG
CCGCTGGCCAGTCTGCAGGCTGGCTTCTGGTTGTCCTTCGGCGCCGTGGCGGTGCTCGCCTGGGTGTTCGGTGGGCGGCT
CGGTACCTGGTCCTGGTGGCGCGTCTGGTGGCGTGCCCAGTGGACCCTGGCGCTGGGCCTGCTGCCGCTGTTCTTCGCTC
TCGGCCTGCCGCTGAGCCTGAGCGGGCCGCTGGCCAACCTGCTCGCCGTGCCCTGGGTCAGCCTGCTGGTGGTGCCGCTG
GCGCTGCTCGGAACCCTGTTGCTGCCCGTACCCTGGCTGGGTGAGGGGTTGCTGTGGCTGGCCGGTGGCCTGCTGGAGCT
GTTGTTCCAGACTCTGGCCTGGATAGCCGCAATGCTGCCAGCCTGGTTGCCCACCGCCGTGCCGCTCTGGTGCTGGCTGC
TCGGCAGCCTGGGGGTACTGCTCTGCCTGTTGCCGGCCGGTGTGCCGCTGCGTGGCTTCGGCCTGGTCATGCTGCTGGCA
GTGTTGCTGCCGCCGCGCGAGCGCATTCCTGCGGGGCAGGCGGAAGTCTGGCAGCTGGACGTCGGCCAGGGCCTGGCCGT
GCTGGTGCGTACCCGTGAGCACGTGCTGCTGTACGACGCCGGGCCGCGCTTCGGCGACTTCGACCTGGGCGAGCGGGTGG
TGCTGCCCTCGCTGCGCCAGCTGGGTGTCGGCCGCCTCGACCTGTTGCTGCTCAGCCATGCCGACAGCGATCATGCCGGC
GGTGCCGGGGCTGTGGTGCGAGGCATGGCGGTAGGGCGGGTGCTGAGCGGCGAGGCAGCGGTTCTGCCGGAGGCGTTGCA
GGCCGGTGCCTGTGTCGATGGCGCCAGCTGGGAGTGGGACGGTGTGCGTTTCACCACCTGGCGCTGGTCCGCGGCGCAGG
CGGGTAACCAGGCCTCCTGCCTGCTCAAGGTGGCGGCCGCAGGCGAGGCGCTGCTGCTCACCGGCGATATCGACGAGGCG
GCGGAAAGGGCGCTCATGGCCGCTGGCCGGGATCTGCGCGCGGACTGGCTGCAGGTGCCGCACCATGGTAGTCGCAGCTC
CTCCAGCGGCGCGTTCCTCGACGCCGTGGCACCGCGTGGCGCGCTGCTGTCGCGCGGCTGGCACAACCCCTTCGGCCATC
CGCATCCGCGCGTCGTGGCGCGCTACGAGGCGCGAGATATTGCCCTGCATGACAGCGCCGAGCTCGGCGCCATCCGGCTA
GTGCTGGGCGCAGGCGAGGGCATTGCCGCCTGGCGCGAGCGCCCGCGTTTCTGGCGGGAAAAATGA

Domains

Predicted by InterproScan.

• Competence protein (Competence) (200-464)

• Metallo-beta-lactamase superfamily (Lactamase_B) (500-684)

• Domain of unknown function (DUF4131) (DUF4131) (20-167)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	67.413	96.491	0.65
comA	Ralstonia pseudosolanacearum GMI1000	37.565	100	0.391