Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   AAG092_RS03625 Genome accession   NZ_CP154874
Coordinates   755620..756291 (-) Length   223 a.a.
NCBI ID   WP_373388585.1    Uniprot ID   -
Organism   Pseudomonas alcaligenes strain Med1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 750620..761291
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAG092_RS03595 (AAG092_03575) murB 751725..752744 (-) 1020 WP_373388581.1 UDP-N-acetylmuramate dehydrogenase -
  AAG092_RS03600 (AAG092_03580) - 752741..753205 (-) 465 WP_373388582.1 low molecular weight protein-tyrosine-phosphatase -
  AAG092_RS03605 (AAG092_03585) kdsB 753205..753969 (-) 765 WP_373388583.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  AAG092_RS03610 (AAG092_03590) - 753970..754155 (-) 186 WP_068826273.1 Trm112 family protein -
  AAG092_RS03615 (AAG092_03595) lpxK 754194..755198 (-) 1005 WP_373388584.1 tetraacyldisaccharide 4'-kinase -
  AAG092_RS03620 (AAG092_03600) - 755195..755623 (-) 429 WP_110682580.1 biopolymer transporter ExbD -
  AAG092_RS03625 (AAG092_03605) exbB 755620..756291 (-) 672 WP_373388585.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  AAG092_RS03630 (AAG092_03610) comA 756364..758589 (-) 2226 WP_373388586.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  AAG092_RS03635 (AAG092_03615) - 758687..759214 (+) 528 WP_373388587.1 DUF2062 domain-containing protein -
  AAG092_RS03640 (AAG092_03620) - 759254..760498 (-) 1245 WP_373388588.1 lipoprotein-releasing ABC transporter permease subunit -
  AAG092_RS03645 (AAG092_03625) lolD 760500..761183 (-) 684 WP_203791975.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 24161.52 Da        Isoelectric Point: 9.6509

>NTDB_id=994315 AAG092_RS03625 WP_373388585.1 755620..756291(-) (exbB) [Pseudomonas alcaligenes strain Med1]
MWELVKSGGWMMLPIILCSIAAAGIIAERLWTLRPSRITPPHLLGQVWLWIKEKKLTNDKLKELRANSPLGQILAAGLAN
SKHGREIMKECIEEAAARVIHELERYLNALGTIAGVAPLLGLLGTVLGMIDIFSAFIGTNMANAAQLAGGISKALITTAA
GLFVAIPALFFHRFLQRRVDELVVGMEQEAIKLVEVVQGDRDVDLGNGSAPAPKEARKEGRKA

Nucleotide


Download         Length: 672 bp        

>NTDB_id=994315 AAG092_RS03625 WP_373388585.1 755620..756291(-) (exbB) [Pseudomonas alcaligenes strain Med1]
GTGTGGGAGCTGGTCAAATCTGGCGGCTGGATGATGCTGCCGATCATTCTGTGTTCCATCGCCGCCGCCGGCATCATCGC
CGAGCGCCTCTGGACCCTGCGGCCGAGCCGCATCACGCCGCCCCATCTGCTGGGCCAGGTGTGGCTGTGGATCAAGGAAA
AGAAGCTCACCAACGACAAGCTCAAGGAGCTGCGCGCCAACTCGCCGCTGGGGCAGATCCTCGCCGCCGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAGGAGTGCATCGAGGAAGCCGCCGCCCGCGTCATCCATGAGCTGGAGCGCTACCT
CAATGCCCTCGGCACCATCGCCGGGGTGGCCCCGCTGCTCGGCCTGCTGGGTACCGTGCTGGGCATGATCGATATTTTCA
GCGCCTTCATCGGCACCAACATGGCCAATGCCGCGCAACTCGCCGGTGGCATCTCCAAGGCCCTGATCACCACCGCCGCC
GGCCTGTTCGTGGCCATCCCGGCGCTGTTCTTCCACCGCTTCCTGCAGCGCCGCGTCGACGAGCTGGTGGTCGGCATGGA
GCAGGAGGCGATCAAGCTGGTGGAAGTGGTGCAGGGTGACCGTGACGTCGACCTGGGCAACGGCAGCGCGCCGGCGCCGA
AGGAAGCCCGCAAAGAGGGCCGGAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

87.143

94.17

0.821

Multiple sequence alignment