Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   V6C34_RS05840 Genome accession   NZ_CP154861
Coordinates   1211103..1211975 (+) Length   290 a.a.
NCBI ID   WP_334212598.1    Uniprot ID   -
Organism   Staphylococcus aureus strain BSN31     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1206103..1216975
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6C34_RS05820 (V6C34_05820) sucC 1206217..1207383 (+) 1167 WP_001020801.1 ADP-forming succinate--CoA ligase subunit beta -
  V6C34_RS05825 (V6C34_05825) sucD 1207405..1208313 (+) 909 WP_000110253.1 succinate--CoA ligase subunit alpha -
  V6C34_RS05830 (V6C34_05830) - 1208540..1209658 (+) 1119 WP_001041666.1 LysM peptidoglycan-binding domain-containing protein -
  V6C34_RS05835 (V6C34_05835) fmhC 1209686..1210930 (+) 1245 WP_000672869.1 FemA/FemB family glycyltransferase FmhC -
  V6C34_RS05840 (V6C34_05840) dprA 1211103..1211975 (+) 873 WP_334212598.1 DNA-processing protein DprA Machinery gene
  V6C34_RS05845 (V6C34_05845) topA 1212149..1214224 (+) 2076 WP_001557331.1 type I DNA topoisomerase -
  V6C34_RS05850 (V6C34_05850) trmFO 1214380..1215687 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33540.07 Da        Isoelectric Point: 9.6794

>NTDB_id=994214 V6C34_RS05840 WP_334212598.1 1211103..1211975(+) (dprA) [Staphylococcus aureus strain BSN31]
MIKLFLLKLYWAHFSTKQIHQFLMAYPNVIKEEGRKKDSYLCEWVNRKENVLLLRKYYAFIKLDHNDIIKELQKLKVSYI
TYMDSEYPVLLKEIYQFPLLLFYKGNIKLINNMHHLAVVGARDSTSYTQQSLEFLLSNDKSKYLTIVSGLAQGADAMAHQ
IALKYNLPTIAVLAFGHQTHYPKSTLALRNKIEEKGLVISEYPPHTPIAKYRFPERNRIISGLSKGVLITEAKEQSGSHI
TIDFALEQNRNVYVLPGSMFNPMTKGNLLRIQEGAKVVLNANDIFEDYYI

Nucleotide


Download         Length: 873 bp        

>NTDB_id=994214 V6C34_RS05840 WP_334212598.1 1211103..1211975(+) (dprA) [Staphylococcus aureus strain BSN31]
TTGATTAAACTATTTTTGCTTAAGTTATACTGGGCACACTTTTCGACTAAACAAATTCATCAATTTTTAATGGCATATCC
TAATGTAATTAAAGAGGAGGGAAGAAAAAAAGATAGTTATTTATGTGAATGGGTGAATAGGAAAGAAAATGTTCTTTTAT
TACGTAAATACTATGCTTTTATAAAACTTGATCATAACGATATTATTAAAGAACTGCAGAAATTAAAAGTAAGTTACATT
ACATATATGGATTCTGAATACCCAGTGCTATTAAAAGAAATATATCAATTTCCATTACTTCTTTTCTATAAAGGGAACAT
CAAATTAATAAATAATATGCATCATTTGGCAGTAGTAGGTGCAAGAGATTCTACAAGTTATACCCAACAGTCTTTAGAAT
TTTTATTATCAAATGATAAAAGCAAATATTTAACAATTGTTTCCGGCCTTGCTCAAGGAGCTGATGCAATGGCACATCAA
ATAGCTTTAAAATACAATCTCCCTACAATTGCAGTTTTAGCCTTTGGCCATCAAACACATTATCCCAAAAGTACATTAGC
ATTAAGAAATAAAATAGAAGAAAAAGGTTTAGTTATATCCGAATATCCACCACATACACCAATTGCTAAATATAGATTTC
CTGAGCGCAATAGAATTATCAGCGGTTTGTCAAAAGGGGTTTTAATTACTGAGGCTAAGGAACAAAGTGGCAGTCACATC
ACGATAGATTTTGCATTAGAGCAAAATAGAAATGTTTATGTTTTACCTGGATCTATGTTTAATCCTATGACAAAAGGTAA
TTTATTACGTATCCAAGAAGGTGCTAAGGTAGTATTAAACGCTAATGATATATTTGAAGACTACTATATTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus N315

99.655

100

0.997
  dprA Staphylococcus aureus MW2

99.31

100

0.993
  dprA/cilB/dalA Streptococcus pneumoniae Rx1

37.102

97.586

0.362
  dprA/cilB/dalA Streptococcus pneumoniae D39

37.102

97.586

0.362
  dprA/cilB/dalA Streptococcus pneumoniae R6

37.102

97.586

0.362
  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

37.102

97.586

0.362

Multiple sequence alignment