Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QMG15_RS12335 Genome accession   NZ_AP027055
Coordinates   2465872..2466369 (-) Length   165 a.a.
NCBI ID   WP_104800452.1    Uniprot ID   A0A2S7JL96
Organism   Limnohabitans sp. INBF002     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2460872..2471369
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMG15_RS12310 (LINBF2_24280) - 2461650..2462354 (-) 705 WP_281788137.1 ABC transporter ATP-binding protein -
  QMG15_RS12315 (LINBF2_24290) - 2462351..2463079 (-) 729 WP_108401504.1 ABC transporter ATP-binding protein -
  QMG15_RS12320 (LINBF2_24300) - 2463152..2464132 (-) 981 WP_281788136.1 branched-chain amino acid ABC transporter permease -
  QMG15_RS12325 (LINBF2_24310) - 2464151..2465002 (-) 852 WP_108358871.1 branched-chain amino acid ABC transporter permease -
  QMG15_RS12330 (LINBF2_24320) - 2465243..2465794 (+) 552 WP_281788823.1 DUF2889 domain-containing protein -
  QMG15_RS12335 (LINBF2_24330) ssb 2465872..2466369 (-) 498 WP_104800452.1 single-stranded DNA-binding protein Machinery gene
  QMG15_RS12340 (LINBF2_24340) - 2466397..2467584 (-) 1188 WP_281790144.1 MFS transporter -
  QMG15_RS12345 (LINBF2_24350) uvrA 2467772..2470750 (+) 2979 WP_281790145.1 excinuclease ABC subunit UvrA -
  QMG15_RS12350 (LINBF2_24360) - 2470808..2471278 (-) 471 WP_281788824.1 peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 17459.54 Da        Isoelectric Point: 5.9538

>NTDB_id=99418 QMG15_RS12335 WP_104800452.1 2465872..2466369(-) (ssb) [Limnohabitans sp. INBF002]
MASVNKVILVGNCGRDPEVRYLPSGQAVANVSVATSSRRKDKNSGEMIEDTQWHRVTFYDRLAEIAGEYVKKGRPIYVEG
RLKYGVYTDKTTGVEKNTVDIIATELQLLGGREGMGGPSGGGEEGGGGYSRPAAAPRAAAPAAQRPAAPAPAKGGFDDMD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=99418 QMG15_RS12335 WP_104800452.1 2465872..2466369(-) (ssb) [Limnohabitans sp. INBF002]
ATGGCATCCGTTAACAAAGTCATCCTCGTCGGCAACTGCGGCCGCGACCCCGAAGTGCGCTACCTGCCCAGCGGCCAAGC
CGTGGCCAACGTGAGCGTGGCCACATCGAGCCGCCGCAAAGACAAAAACAGCGGCGAGATGATTGAAGACACACAGTGGC
ACCGCGTCACGTTCTACGACCGCTTGGCTGAAATCGCTGGCGAATACGTCAAAAAAGGCCGTCCCATTTATGTGGAAGGC
CGCTTGAAATACGGCGTGTACACCGACAAAACCACAGGCGTGGAAAAAAACACCGTGGACATCATTGCGACTGAGTTGCA
ACTCTTGGGTGGCCGTGAAGGCATGGGCGGCCCCAGCGGTGGTGGCGAAGAAGGCGGCGGTGGCTACAGCCGCCCAGCGG
CAGCGCCTCGCGCCGCAGCCCCAGCAGCGCAACGCCCTGCGGCACCTGCGCCTGCCAAGGGTGGCTTTGACGACATGGAC
GACGACATCCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2S7JL96

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria gonorrhoeae MS11

49.153

100

0.527
  ssb Neisseria meningitidis MC58

48.876

100

0.527
  ssb Glaesserella parasuis strain SC1401

44.022

100

0.491
  ssb Vibrio cholerae strain A1552

42.857

100

0.473

Multiple sequence alignment