Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   AAH980_RS13005 Genome accession   NZ_CP154856
Coordinates   2761833..2762963 (-) Length   376 a.a.
NCBI ID   WP_284081009.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain Ab25     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 2756833..2767963
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAH980_RS12980 (AAH980_12980) - 2757006..2757770 (-) 765 WP_284081005.1 helix-turn-helix transcriptional regulator -
  AAH980_RS12985 (AAH980_12985) - 2757792..2759006 (-) 1215 WP_284081007.1 MFS transporter -
  AAH980_RS12990 (AAH980_12990) - 2759141..2759794 (+) 654 WP_284081008.1 TetR/AcrR family transcriptional regulator -
  AAH980_RS12995 (AAH980_12995) - 2759900..2760820 (+) 921 WP_002054284.1 DMT family transporter -
  AAH980_RS13000 (AAH980_13000) - 2761213..2761782 (-) 570 WP_000633612.1 Sua5/YciO/YrdC/YwlC family protein -
  AAH980_RS13005 (AAH980_13005) dprA 2761833..2762963 (-) 1131 WP_284081009.1 DNA-processing protein DprA Machinery gene
  AAH980_RS13010 (AAH980_13010) tsaP 2762984..2764138 (-) 1155 WP_284081010.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  AAH980_RS13015 (AAH980_13015) def 2764261..2764791 (+) 531 WP_002054252.1 peptide deformylase -
  AAH980_RS13020 (AAH980_13020) - 2764828..2765256 (+) 429 WP_002054220.1 DUF2946 family protein -
  AAH980_RS13025 (AAH980_13025) - 2765328..2767442 (+) 2115 WP_284081011.1 TonB-dependent copper receptor -
  AAH980_RS13030 (AAH980_13030) - 2767486..2767692 (+) 207 WP_004711026.1 DUF4199 domain-containing protein -

Sequence


Protein


Download         Length: 376 a.a.        Molecular weight: 41785.18 Da        Isoelectric Point: 6.4984

>NTDB_id=994091 AAH980_RS13005 WP_284081009.1 2761833..2762963(-) (dprA) [Acinetobacter nosocomialis strain Ab25]
MLTQLSSHHYHTLKVWYLVQHSSVSFKKIIDYFGTCEKATQPDGLAKWSSLGLHANHLKRVNEFQTAQGQAQFEQLIQQV
QQHTDFILTLDDSGYPTQLLPYTDHPPVIFGKGQAQALLQPQIAIVGSRKPSPHGRQVAYDFAYYLSEKGFFISSGLAYG
IDEAAHQGASAHQRTIAVTGTGLDTTYPAQNKKLGEHILAQNGAIITEFLPGTPPLQQHFPRRNRIVSGLSLGVLVVEAT
LKSGSLITANKAAEQGKTVFAIPGHIYSEFHQGCHQLIREGAILVDHPEQIIEDLALPTQWQSQQQSQNEETNTNTPEIP
EHLIDLYQSLDWVGQNIDQLVIHHNVSVSELTSSLMELELLGLCMQQSGLYLRCRS

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=994091 AAH980_RS13005 WP_284081009.1 2761833..2762963(-) (dprA) [Acinetobacter nosocomialis strain Ab25]
ATGCTCACCCAACTTTCTTCACACCATTACCACACGCTTAAAGTGTGGTATTTGGTGCAGCACTCATCAGTTAGTTTTAA
AAAAATTATCGATTATTTTGGAACTTGTGAAAAAGCAACTCAACCTGATGGTTTAGCAAAGTGGTCCTCTTTGGGGTTAC
ATGCTAATCACTTAAAGCGTGTAAACGAATTTCAAACGGCACAAGGCCAAGCTCAGTTCGAACAGCTTATACAACAAGTT
CAGCAGCATACTGATTTTATTTTGACGTTAGATGACTCTGGCTACCCTACTCAATTACTCCCTTATACAGATCATCCACC
TGTTATTTTTGGAAAAGGTCAGGCACAGGCATTATTGCAACCGCAAATTGCGATTGTCGGTAGCCGAAAACCAAGCCCAC
ATGGACGTCAGGTGGCTTATGATTTCGCCTACTATTTAAGTGAAAAGGGCTTTTTTATTAGTAGTGGTCTGGCTTATGGC
ATTGATGAAGCAGCTCATCAAGGTGCATCCGCTCATCAACGTACAATTGCAGTCACGGGTACGGGCCTAGACACTACTTA
TCCAGCTCAAAATAAAAAACTGGGAGAACATATTTTGGCTCAGAACGGCGCCATTATTACTGAGTTTTTACCAGGTACAC
CACCATTACAACAGCATTTCCCACGTAGAAACCGAATTGTCAGTGGTTTGAGTTTAGGCGTTTTGGTGGTAGAAGCGACA
TTAAAAAGCGGCTCACTCATCACGGCCAATAAAGCTGCTGAACAAGGCAAAACCGTATTCGCTATTCCGGGTCATATTTA
TAGTGAATTCCATCAAGGATGCCATCAACTTATTCGTGAGGGAGCAATTTTAGTTGATCATCCCGAACAAATTATTGAAG
ACCTCGCCTTACCAACTCAATGGCAAAGCCAGCAACAAAGTCAAAATGAAGAAACTAATACGAATACTCCAGAAATCCCT
GAGCATTTGATTGACCTTTATCAGTCTTTAGACTGGGTAGGACAAAATATTGACCAGCTTGTAATTCATCATAATGTTTC
GGTTTCTGAACTGACCTCTTCACTAATGGAACTAGAACTACTCGGTTTATGTATGCAACAATCAGGGCTGTATTTACGTT
GTCGTTCTTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii strain A118

95.479

100

0.955

  dprA Acinetobacter baumannii D1279779

95.479

100

0.955

  dprA Acinetobacter baylyi ADP1

70.604

100

0.715

  dprA Vibrio cholerae strain A1552

42.9

88.032

0.378


Multiple sequence alignment