Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   AAIK43_RS22055 Genome accession   NZ_CP154792
Coordinates   4703125..4704201 (-) Length   358 a.a.
NCBI ID   WP_115599022.1    Uniprot ID   -
Organism   Achromobacter denitrificans strain BP1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4698125..4709201
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAIK43_RS22050 (AAIK43_22050) - 4701381..4703039 (+) 1659 WP_343498573.1 CYTH and CHAD domain-containing protein -
  AAIK43_RS22055 (AAIK43_22055) pilA 4703125..4704201 (-) 1077 WP_115599022.1 signal recognition particle-docking protein FtsY Machinery gene
  AAIK43_RS22060 (AAIK43_22060) rsmD 4704533..4705099 (+) 567 WP_088145757.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  AAIK43_RS22065 (AAIK43_22065) coaD 4705158..4705661 (+) 504 WP_013396175.1 pantetheine-phosphate adenylyltransferase -
  AAIK43_RS22070 (AAIK43_22070) - 4705781..4706032 (+) 252 WP_062683089.1 YfhL family 4Fe-4S dicluster ferredoxin -
  AAIK43_RS22075 (AAIK43_22075) - 4706029..4707249 (+) 1221 WP_232482089.1 benzoate/H(+) symporter BenE family transporter -
  AAIK43_RS22080 (AAIK43_22080) - 4707296..4707679 (-) 384 WP_175178947.1 MOSC N-terminal beta barrel domain-containing protein -

Sequence

Protein


Download         Length: 358 a.a.        Molecular weight: 37120.83 Da        Isoelectric Point: 6.8945

>NTDB_id=993913 AAIK43_RS22055 WP_115599022.1 4703125..4704201(-) (pilA) [Achromobacter denitrificans strain BP1]
MPVAPAVAPPAAAPAPAAEAVREPVVPPAAPPAPAAIPAAVAPEPVPAPVAEAPKKASWLSRLKQGLSRTGQSIGGIFVG
VKVDENLFEELESALIMADAGLEATEKLLTALRARVKKERIEDPAKVKTALRQLLADHLRPLERDFDLKRAQPLVVMIAG
VNGAGKTTSIGKLAHTFQRQGASVLLAAGDTFRAAAREQLVEWGSRNNVTVISQDGGDPAAVAFDAVNAGRARGMGVVMV
DTAGRLPTQLHLMEELKKIRRVIGKADAAAPHEVLLVVDGNTGQNALAQIRAFDAAINLTGLVVTKLDGTAKGGTLAAVA
AGSQGVRPIPVYWIGVGESLEDLQPFVADEFAGALLSD

Nucleotide


Download         Length: 1077 bp        

>NTDB_id=993913 AAIK43_RS22055 WP_115599022.1 4703125..4704201(-) (pilA) [Achromobacter denitrificans strain BP1]
ATTCCGGTTGCGCCGGCAGTCGCGCCGCCCGCAGCTGCGCCCGCCCCCGCCGCGGAGGCGGTTCGCGAGCCCGTCGTTCC
GCCCGCCGCGCCGCCGGCGCCTGCCGCGATTCCCGCGGCCGTGGCGCCCGAGCCCGTTCCCGCGCCCGTCGCCGAGGCGC
CCAAGAAGGCGTCCTGGCTGTCGCGGCTGAAGCAGGGCCTGTCGCGCACCGGCCAAAGCATTGGCGGCATTTTCGTCGGC
GTCAAGGTCGACGAGAACCTGTTCGAGGAACTCGAATCGGCGCTCATTATGGCCGATGCGGGCCTGGAGGCCACCGAGAA
GCTGCTGACCGCGCTGCGCGCCCGGGTCAAGAAGGAGCGCATCGAAGACCCGGCCAAGGTGAAGACCGCCCTGCGCCAAC
TGCTCGCCGACCACCTGCGTCCGCTGGAGCGCGATTTCGACCTCAAGCGCGCGCAGCCGCTGGTCGTCATGATCGCGGGC
GTCAACGGGGCGGGCAAGACCACCTCCATCGGCAAGCTGGCGCACACGTTCCAGCGCCAGGGGGCCAGCGTGCTGCTGGC
GGCGGGCGACACTTTCCGGGCGGCCGCCCGCGAGCAGCTCGTCGAATGGGGCAGCCGCAACAACGTTACGGTGATTTCCC
AGGACGGCGGCGATCCGGCGGCGGTGGCGTTCGACGCCGTCAACGCGGGGCGCGCGCGCGGCATGGGCGTGGTGATGGTG
GATACCGCCGGCCGCCTGCCGACGCAGCTGCACCTGATGGAAGAACTCAAGAAGATCCGCCGCGTGATCGGCAAGGCGGA
TGCCGCGGCGCCTCACGAGGTGCTGCTGGTGGTCGACGGCAATACCGGGCAGAACGCCCTGGCGCAGATCCGCGCCTTCG
ATGCGGCCATCAATCTGACGGGCCTGGTCGTGACCAAGCTGGACGGCACCGCCAAGGGCGGAACGCTGGCGGCGGTGGCC
GCGGGCAGCCAGGGCGTGCGCCCGATCCCGGTGTACTGGATCGGCGTGGGCGAAAGCCTGGAAGACCTGCAGCCCTTCGT
GGCCGACGAATTCGCAGGGGCCTTGCTGTCGGATTGA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(154-356)

SRP54-type protein, helical bundle domain (SRP54_N)

(72-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

53.501

99.721

0.534

Multiple sequence alignment