Detailed information NTG0099390

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: F601_RS0104640
• Genome accession: NZ_AQYA01000030
• Coordinates: 9252..10253 (+)
• Length: 333 a.a.
• NCBI ID: WP_026183110.1
• Uniprot ID: -
• Organism: Streptococcus henryi DSM 19005
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 4252..15253

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
F601_RS0104615	-	5271..5972 (+)	702	WP_248678594.1	hypothetical protein	-
F601_RS0104620	purB	6269..7567 (+)	1299	WP_018164502.1	adenylosuccinate lyase	-
F601_RS0104625	comR	7782..8693 (+)	912	WP_018164503.1	helix-turn-helix domain-containing protein	Regulator
F601_RS13375	-	8781..8885 (+)	105	WP_018164504.1	quorum-sensing system DWW-type pheromone	-
F601_RS0104635	-	8939..9187 (+)	249	WP_018164505.1	hypothetical protein	-
F601_RS0104640	ruvB	9252..10253 (+)	1002	WP_026183110.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
F601_RS0104645	-	10436..10870 (+)	435	WP_018164507.1	low molecular weight protein-tyrosine-phosphatase	-
F601_RS0104650	-	10881..11261 (+)	381	WP_018164508.1	hypothetical protein	-
F601_RS0104655	-	11258..13042 (+)	1785	WP_018164509.1	acyltransferase family protein	-

Sequence

Protein

• Length: 333 a.a.
• Molecular weight: 37376.84 Da
• Isoelectric Point: 4.5705

>NTDB_id=99390 F601_RS0104640 WP_026183110.1 9252..10253(+) (ruvB) [Streptococcus henryi DSM 19005]
MTRILDNDLMGDEEYVERTLRPQYLREYIGQDKVKDQLKIFIEAAKLRDESLDHVLLFGPPGLGKTTMAFVIANELGVNL
KQTSGPAIEKAGDLVAILNDLEPGDVLFIDEIHRMPMAVEEVLYSAMEDFYIDIMIGAGETSRSVHLDLPPFTLIGATTR
AGMLSNPLRARFGITGHMEYYEEADLTEIVERTAAIFEMEIVHEAAQELARRSRGTPRIANRLLKRVRDYAQIMGDGIIT
AQITDKALSMLDVDHEGLDYVDQKILRTMIEMYNGGPVGLGTLSVNIAEERDTVEDMYEPYLIQKGFIMRTRTGRVATAK
AYEHLGYPLSDKG

Nucleotide

• Length: 1002 bp

>NTDB_id=99390 F601_RS0104640 WP_026183110.1 9252..10253(+) (ruvB) [Streptococcus henryi DSM 19005]
ATGACTAGAATTTTAGATAATGATTTGATGGGAGATGAAGAGTACGTAGAACGTACCCTGCGTCCCCAGTATTTACGAGA
ATATATTGGACAGGATAAGGTTAAGGACCAGCTCAAGATTTTTATTGAAGCGGCCAAACTTCGTGATGAGTCTCTGGACC
ATGTGCTCCTTTTTGGTCCTCCAGGGCTTGGTAAGACGACCATGGCCTTTGTTATCGCTAATGAGCTAGGTGTTAACCTC
AAACAGACCTCAGGTCCTGCCATTGAAAAGGCTGGTGACTTGGTGGCTATCCTTAACGACTTAGAACCTGGTGATGTCCT
CTTTATTGACGAAATCCACCGCATGCCCATGGCTGTAGAAGAAGTCCTCTACAGTGCCATGGAAGATTTCTATATTGATA
TTATGATTGGCGCTGGTGAAACCAGTCGCAGCGTCCACTTGGATTTGCCACCCTTTACCCTAATTGGTGCGACGACTCGA
GCTGGGATGCTCTCTAATCCATTAAGAGCACGTTTTGGTATTACGGGCCATATGGAATACTACGAAGAAGCTGACCTCAC
AGAGATTGTTGAACGTACCGCAGCTATCTTTGAGATGGAAATCGTACATGAAGCTGCGCAAGAGCTGGCAAGACGTAGCC
GCGGAACACCCCGTATTGCAAATAGACTCCTAAAACGCGTCCGTGACTATGCCCAGATTATGGGAGACGGTATCATCACA
GCCCAGATTACTGATAAAGCACTAAGCATGTTAGATGTAGACCACGAGGGATTGGACTATGTTGATCAGAAGATCCTAAG
AACCATGATCGAAATGTATAACGGTGGTCCAGTTGGTTTGGGCACTCTATCAGTTAACATCGCAGAAGAACGTGATACCG
TTGAAGACATGTACGAACCCTATCTCATTCAAAAAGGCTTTATCATGCGTACTAGAACAGGACGCGTGGCAACGGCTAAG
GCATACGAACACTTAGGCTACCCTTTATCAGATAAGGGATAA

Domains

Predicted by InterProScan.

• RuvB AAA lid domain (AAA_lid_4) (181-254)

• RuvB C-terminal winged helix domain (WHD_RuvB) (256-325)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (20-178)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Streptococcus pneumoniae TIGR4	90.663	99.7	0.904
ruvB	Streptococcus pneumoniae R6	90.361	99.7	0.901
ruvB	Streptococcus pneumoniae D39	90.361	99.7	0.901
ruvB	Bacillus subtilis subsp. subtilis str. 168	60.681	96.997	0.589
ruvB	Helicobacter pylori 26695	50	97.898	0.489
ruvB	Synechocystis sp. PCC 6803	49.84	93.994	0.468