Detailed information NTG0993840

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: AAEQ75_RS00205
• Genome accession: NZ_CP154631
• Coordinates: 36650..38875 (-)
• Length: 741 a.a.
• NCBI ID: WP_343350511.1
• Uniprot ID: -
• Organism: Pseudomonas sediminis strain I4
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 31650..43875

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAEQ75_RS00170 (AAEQ75_00170)	murB	32065..33084 (-)	1020	WP_343350505.1	UDP-N-acetylmuramate dehydrogenase	-
AAEQ75_RS00175 (AAEQ75_00175)	-	33081..33545 (-)	465	WP_343350506.1	low molecular weight protein-tyrosine-phosphatase	-
AAEQ75_RS00180 (AAEQ75_00180)	kdsB	33545..34309 (-)	765	WP_343350507.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
AAEQ75_RS00185 (AAEQ75_00185)	-	34310..34495 (-)	186	WP_013714804.1	Trm112 family protein	-
AAEQ75_RS00190 (AAEQ75_00190)	lpxK	34518..35519 (-)	1002	WP_343350509.1	tetraacyldisaccharide 4'-kinase	-
AAEQ75_RS00195 (AAEQ75_00195)	-	35520..35948 (-)	429	WP_125878645.1	biopolymer transporter ExbD	-
AAEQ75_RS00200 (AAEQ75_00200)	exbB	35945..36577 (-)	633	WP_017677620.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
AAEQ75_RS00205 (AAEQ75_00205)	comA	36650..38875 (-)	2226	WP_343350511.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
AAEQ75_RS00210 (AAEQ75_00210)	-	39004..39531 (+)	528	WP_125878644.1	DUF2062 domain-containing protein	-
AAEQ75_RS00215 (AAEQ75_00215)	-	39570..40814 (-)	1245	WP_125878643.1	lipoprotein-releasing ABC transporter permease subunit	-
AAEQ75_RS00220 (AAEQ75_00220)	lolD	40814..41515 (-)	702	WP_125835823.1	lipoprotein-releasing ABC transporter ATP-binding protein LolD	-
AAEQ75_RS00225 (AAEQ75_00225)	-	41520..42767 (-)	1248	WP_125835824.1	lipoprotein-releasing ABC transporter permease subunit	-
AAEQ75_RS00230 (AAEQ75_00230)	-	43046..43612 (+)	567	WP_003461983.1	PilZ domain-containing protein	-

Sequence

Protein

• Length: 741 a.a.
• Molecular weight: 80895.19 Da
• Isoelectric Point: 10.3485

>NTDB_id=993840 AAEQ75_RS00205 WP_343350511.1 36650..38875(-) (comA) [Pseudomonas sediminis strain I4]
MRTGMLALALGLLTLRFLPSLPPSWLLLVAVCAALALLFSRLYPLGFFLLGLAWACSSAQSALDDRLAPPLDGRTLWLEG
RVVGLPEVADGVVRFQFEEAHSRRAELPKRMRLAWYGGPPVQGGERWRLAVNLKRPHGLVNPQSFDYEAWLLAQRIGATG
TIKSGERLSPATGFGSWRDSLRQHLLAVPAFGREGAIAALVLGDGSGLSTSDWRLLQHTGTVHLMVISGQHIALLAGFLY
GLVALLARVGAWPRRWPWLPCACALALSGALVYGMLAGFEVPVRRACVMVALVLLWRMRFRHLGAWWPLLLALIVVLLLE
PLASLQPGFWLSFSAVAILALVFGGRLGVWGWWRGLTRAQWTMAIGLLPMMLILGLPVSSSGPLANLVAVPWVGLVVVPL
ALLGTLLLPVPVIGESLLWLAGGALYLLFELLSVIAAWLPAWLPSNLPLWAWLLAVAGALLLLLPAGVPLRLPGLALLLP
ALLLPPKQLDDGRADVWVLDVGQGLAVLVRTREHSLLYDAGPRFGDFDTGERIVLPSLRAMNLRRLDLMLLSHADNDHAG
GAAAIKAGMPVSRIISGEPHRLARTLGAEDCESGQRWQWNDVTFRLWQWDQAVSGNQRSCVLQIEAAGERLLLTGDIDVR
AERALMQADFPLASRWLLAPHHGSRTSSSQAFIDAVGAQHVLITRSRHNAFGHPHPQVLARYQAAGVEVHDTALRGALHL
RLGEQVAPRGLRSEPRFWREK

Nucleotide

• Length: 2226 bp

>NTDB_id=993840 AAEQ75_RS00205 WP_343350511.1 36650..38875(-) (comA) [Pseudomonas sediminis strain I4]
ATGCGAACAGGGATGTTGGCACTGGCCTTGGGGCTATTGACGCTGCGCTTTCTGCCAAGCCTGCCGCCGAGTTGGCTGTT
GCTGGTGGCGGTCTGTGCGGCTCTGGCTTTGCTGTTCTCGCGCCTCTATCCGCTTGGGTTCTTTTTGCTGGGGTTGGCCT
GGGCCTGCAGCTCGGCGCAATCGGCATTGGATGACCGCCTTGCTCCACCGCTCGATGGCCGTACCCTGTGGCTGGAGGGG
CGGGTGGTCGGCCTGCCTGAAGTGGCCGATGGTGTCGTGCGCTTCCAGTTCGAAGAGGCGCACTCGCGGCGCGCCGAGCT
GCCGAAAAGAATGCGCTTGGCCTGGTATGGTGGGCCGCCGGTGCAAGGCGGCGAGCGCTGGCGTCTGGCGGTCAACCTGA
AGCGGCCGCATGGCCTGGTCAATCCGCAGAGCTTCGACTACGAAGCCTGGTTGCTGGCGCAGCGTATCGGCGCCACGGGC
ACGATCAAGTCTGGCGAACGGTTATCCCCCGCGACGGGCTTTGGTAGCTGGCGCGACAGCCTTCGCCAGCATCTGCTGGC
TGTGCCGGCCTTTGGGCGCGAAGGTGCCATTGCCGCTCTGGTCCTCGGTGATGGTTCCGGCCTGAGTACAAGCGACTGGC
GCCTGCTGCAGCACACGGGCACGGTGCACCTGATGGTCATCTCCGGCCAGCATATTGCCCTGCTAGCCGGCTTTCTTTAC
GGACTGGTGGCTTTGCTGGCGAGAGTCGGTGCCTGGCCAAGGCGCTGGCCCTGGTTGCCCTGCGCCTGTGCGTTGGCCTT
GAGCGGAGCTCTGGTCTACGGGATGCTGGCTGGTTTTGAGGTGCCGGTGCGCAGGGCCTGCGTGATGGTTGCGCTGGTGC
TGCTCTGGCGCATGCGCTTTCGTCATCTGGGCGCCTGGTGGCCATTGTTGTTGGCCTTGATCGTGGTTCTGCTGCTGGAG
CCGCTGGCCTCGTTGCAGCCGGGTTTCTGGTTGTCGTTTTCGGCGGTGGCGATTCTTGCTCTGGTGTTTGGCGGTCGGCT
CGGTGTCTGGGGTTGGTGGCGCGGGCTGACACGTGCGCAGTGGACCATGGCCATCGGCCTGCTGCCGATGATGCTGATTC
TCGGTCTGCCCGTCAGTAGCAGCGGGCCGTTGGCCAATCTGGTTGCCGTGCCTTGGGTGGGGCTGGTAGTCGTACCCCTG
GCCTTGCTGGGCACTCTGCTGCTGCCTGTCCCGGTGATCGGGGAGAGCTTGCTGTGGCTGGCCGGTGGTGCTTTGTATCT
GTTGTTCGAGTTGCTGAGCGTGATCGCTGCTTGGCTACCTGCCTGGTTGCCTAGCAACCTGCCGCTGTGGGCCTGGTTAT
TGGCGGTGGCAGGTGCCTTGTTGCTCCTGCTGCCGGCCGGAGTACCGTTGCGTCTACCCGGCCTTGCGTTGTTATTGCCT
GCATTGCTGTTGCCGCCGAAACAGCTGGACGATGGTCGCGCCGATGTCTGGGTGCTAGACGTAGGGCAGGGGCTGGCGGT
GCTGGTACGTACCCGGGAACACAGCCTGCTGTACGACGCAGGCCCGCGCTTCGGCGATTTCGATACAGGGGAGCGTATTG
TCCTGCCTTCACTGCGAGCAATGAACCTCAGGCGGCTCGACCTGATGTTGCTCAGTCATGCCGACAATGATCATGCCGGC
GGGGCTGCCGCGATCAAAGCCGGTATGCCGGTGAGCCGGATCATCAGTGGCGAGCCGCACCGGCTGGCCAGAACGCTCGG
CGCTGAGGATTGCGAATCGGGGCAGCGCTGGCAATGGAACGACGTGACGTTCAGGCTGTGGCAGTGGGATCAGGCCGTAT
CCGGCAATCAGCGTTCTTGTGTATTGCAGATCGAGGCGGCGGGTGAGCGCCTGTTGCTGACTGGTGATATCGATGTCCGC
GCCGAACGCGCGCTGATGCAGGCCGACTTTCCCCTGGCCTCGCGTTGGTTGCTGGCGCCCCATCACGGCAGTCGAACGTC
ATCCAGTCAGGCTTTTATCGATGCGGTCGGTGCGCAGCATGTGCTGATCACGCGCAGTCGCCACAATGCCTTTGGGCATC
CTCACCCGCAGGTGTTGGCGCGCTATCAGGCGGCAGGCGTCGAGGTGCATGACACGGCGTTGCGCGGTGCCTTGCATTTA
CGTCTGGGCGAACAGGTCGCGCCTCGCGGGTTGCGAAGCGAGCCACGTTTCTGGCGGGAAAAATGA

Domains

Predicted by InterproScan.

• Domain of unknown function (DUF4131) (DUF4131) (21-167)

• Metallo-beta-lactamase superfamily (Lactamase_B) (500-677)

• Competence protein (Competence) (200-465)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	67.364	96.761	0.652
comA	Ralstonia pseudosolanacearum GMI1000	36.715	100	0.41