Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   AAEQ75_RS00200 Genome accession   NZ_CP154631
Coordinates   35945..36577 (-) Length   210 a.a.
NCBI ID   WP_017677620.1    Uniprot ID   A0A1G6U6W3
Organism   Pseudomonas sediminis strain I4     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 30945..41577
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAEQ75_RS00170 (AAEQ75_00170) murB 32065..33084 (-) 1020 WP_343350505.1 UDP-N-acetylmuramate dehydrogenase -
  AAEQ75_RS00175 (AAEQ75_00175) - 33081..33545 (-) 465 WP_343350506.1 low molecular weight protein-tyrosine-phosphatase -
  AAEQ75_RS00180 (AAEQ75_00180) kdsB 33545..34309 (-) 765 WP_343350507.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  AAEQ75_RS00185 (AAEQ75_00185) - 34310..34495 (-) 186 WP_013714804.1 Trm112 family protein -
  AAEQ75_RS00190 (AAEQ75_00190) lpxK 34518..35519 (-) 1002 WP_343350509.1 tetraacyldisaccharide 4'-kinase -
  AAEQ75_RS00195 (AAEQ75_00195) - 35520..35948 (-) 429 WP_125878645.1 biopolymer transporter ExbD -
  AAEQ75_RS00200 (AAEQ75_00200) exbB 35945..36577 (-) 633 WP_017677620.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  AAEQ75_RS00205 (AAEQ75_00205) comA 36650..38875 (-) 2226 WP_343350511.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  AAEQ75_RS00210 (AAEQ75_00210) - 39004..39531 (+) 528 WP_125878644.1 DUF2062 domain-containing protein -
  AAEQ75_RS00215 (AAEQ75_00215) - 39570..40814 (-) 1245 WP_125878643.1 lipoprotein-releasing ABC transporter permease subunit -
  AAEQ75_RS00220 (AAEQ75_00220) lolD 40814..41515 (-) 702 WP_125835823.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 22869.13 Da        Isoelectric Point: 7.8833

>NTDB_id=993839 AAEQ75_RS00200 WP_017677620.1 35945..36577(-) (exbB) [Pseudomonas sediminis strain I4]
MWELVKAGGWMMLPIILCSIAAAGIVAERLWTLRPARVTPANLLAQVWRWIKDKKLNNQKLKELREDSPLGQILAAGLAN
SKHGREIMKECIEEAAARVIHELERYLNALGTIAGIAPLLGLLGTVLGMIEIFSSFMGSGMANAPMLAGGISKALITTAA
GLMVAIPALFFHRYLQRRVDELVVGMEQEAIKLVEMVQGDRDVDLGEGKA

Nucleotide


Download         Length: 633 bp        

>NTDB_id=993839 AAEQ75_RS00200 WP_017677620.1 35945..36577(-) (exbB) [Pseudomonas sediminis strain I4]
GTGTGGGAACTGGTCAAAGCTGGCGGCTGGATGATGCTGCCGATCATTCTCTGTTCCATCGCTGCTGCCGGCATCGTCGC
CGAGCGCCTTTGGACCCTGCGGCCCGCCCGCGTCACCCCAGCCAATCTGCTGGCTCAGGTATGGCGCTGGATCAAGGACA
AGAAACTTAACAACCAGAAACTCAAGGAGTTGCGCGAGGATTCGCCGCTGGGGCAGATTCTCGCTGCCGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATCGAGGAGGCCGCGGCTCGCGTCATCCATGAGCTGGAACGCTACCT
CAATGCGCTTGGCACCATTGCCGGGATCGCGCCGCTGCTCGGCCTGCTTGGTACCGTATTGGGTATGATCGAAATCTTCA
GTTCTTTCATGGGCTCGGGCATGGCCAATGCGCCGATGCTCGCCGGTGGTATCTCCAAGGCGTTGATTACCACAGCGGCC
GGCCTGATGGTGGCGATTCCGGCGCTGTTCTTCCACCGCTATCTGCAGCGTCGTGTCGACGAACTGGTAGTCGGCATGGA
GCAGGAAGCGATCAAGCTGGTGGAAATGGTGCAGGGTGATCGCGACGTCGACCTGGGTGAGGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1G6U6W3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

89.524

100

0.895

Multiple sequence alignment