Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | AAIB12_RS06880 | Genome accession | NZ_CP154469 |
| Coordinates | 1478559..1479059 (+) | Length | 166 a.a. |
| NCBI ID | WP_010907419.1 | Uniprot ID | - |
| Organism | Pasteurella multocida strain Pm3 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1473559..1484059
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AAIB12_RS06865 (AAIB12_06865) | rlmB | 1474102..1474839 (+) | 738 | WP_005725044.1 | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB | - |
| AAIB12_RS06870 (AAIB12_06870) | sodC | 1474925..1475485 (-) | 561 | WP_343298164.1 | superoxide dismutase [Cu-Zn] SodC | - |
| AAIB12_RS06875 (AAIB12_06875) | uvrA | 1475556..1478387 (-) | 2832 | WP_010907420.1 | excinuclease ABC subunit UvrA | - |
| AAIB12_RS06880 (AAIB12_06880) | ssb | 1478559..1479059 (+) | 501 | WP_010907419.1 | single-stranded DNA-binding protein | Machinery gene |
| AAIB12_RS06885 (AAIB12_06885) | - | 1479203..1480489 (+) | 1287 | WP_005631039.1 | site-specific integrase | - |
| AAIB12_RS06890 (AAIB12_06890) | - | 1480476..1481996 (+) | 1521 | WP_010907418.1 | site-specific integrase | - |
| AAIB12_RS06895 (AAIB12_06895) | - | 1481999..1484035 (+) | 2037 | WP_010907417.1 | integrase | - |
Sequence
Protein
Download Length: 166 a.a. Molecular weight: 18687.70 Da Isoelectric Point: 5.3353
>NTDB_id=993518 AAIB12_RS06880 WP_010907419.1 1478559..1479059(+) (ssb) [Pasteurella multocida strain Pm3]
MAGVNKVIIVGNLGNDPEIRTMPNGEAVANISVATSESWIDKNTNERREVTEWHRIVFYRRQAEVAGEYLRKGSKVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVLQMLDSRNERQQTGGYAPQTAAPQYNAPTGSYGAQPSRPATKPAPQNEPPMDMGFE
EDNIPF
MAGVNKVIIVGNLGNDPEIRTMPNGEAVANISVATSESWIDKNTNERREVTEWHRIVFYRRQAEVAGEYLRKGSKVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVLQMLDSRNERQQTGGYAPQTAAPQYNAPTGSYGAQPSRPATKPAPQNEPPMDMGFE
EDNIPF
Nucleotide
Download Length: 501 bp
>NTDB_id=993518 AAIB12_RS06880 WP_010907419.1 1478559..1479059(+) (ssb) [Pasteurella multocida strain Pm3]
ATGGCTGGAGTAAATAAAGTAATTATTGTAGGAAACTTAGGTAACGATCCTGAAATCCGCACAATGCCAAATGGTGAAGC
CGTAGCCAATATCAGCGTCGCGACCAGTGAAAGCTGGATCGACAAAAATACTAACGAACGTCGTGAAGTCACCGAATGGC
ATCGCATCGTATTCTACCGTCGCCAAGCTGAAGTGGCTGGGGAATATCTGCGTAAAGGTTCAAAAGTGTATGTAGAGGGA
CGCCTAAAAACCCGTAAATGGCAAGACCAAAATGGGCAAGATCGCTACACTACCGAAATCCAAGGCGACGTGTTGCAAAT
GCTCGACAGCCGTAACGAACGTCAACAAACCGGCGGCTATGCCCCACAAACCGCTGCGCCACAATATAATGCCCCAACAG
GTAGCTACGGTGCACAACCTTCTCGTCCAGCGACAAAACCCGCTCCACAAAACGAACCTCCAATGGACATGGGCTTTGAG
GAAGATAATATTCCGTTTTGA
ATGGCTGGAGTAAATAAAGTAATTATTGTAGGAAACTTAGGTAACGATCCTGAAATCCGCACAATGCCAAATGGTGAAGC
CGTAGCCAATATCAGCGTCGCGACCAGTGAAAGCTGGATCGACAAAAATACTAACGAACGTCGTGAAGTCACCGAATGGC
ATCGCATCGTATTCTACCGTCGCCAAGCTGAAGTGGCTGGGGAATATCTGCGTAAAGGTTCAAAAGTGTATGTAGAGGGA
CGCCTAAAAACCCGTAAATGGCAAGACCAAAATGGGCAAGATCGCTACACTACCGAAATCCAAGGCGACGTGTTGCAAAT
GCTCGACAGCCGTAACGAACGTCAACAAACCGGCGGCTATGCCCCACAAACCGCTGCGCCACAATATAATGCCCCAACAG
GTAGCTACGGTGCACAACCTTCTCGTCCAGCGACAAAACCCGCTCCACAAAACGAACCTCCAATGGACATGGGCTTTGAG
GAAGATAATATTCCGTTTTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
68.681 |
100 |
0.753 |
| ssb | Vibrio cholerae strain A1552 |
54.144 |
100 |
0.59 |
| ssb | Neisseria meningitidis MC58 |
44.068 |
100 |
0.47 |
| ssb | Neisseria gonorrhoeae MS11 |
44.068 |
100 |
0.47 |