Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | AAIB12_RS00405 | Genome accession | NZ_CP154469 |
| Coordinates | 66102..66554 (-) | Length | 150 a.a. |
| NCBI ID | WP_014390703.1 | Uniprot ID | - |
| Organism | Pasteurella multocida strain Pm3 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 60714..108614 | 66102..66554 | within | 0 |
Gene organization within MGE regions
Location: 60714..108614
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AAIB12_RS00385 (AAIB12_00385) | - | 60714..61124 (-) | 411 | WP_010907416.1 | hypothetical protein | - |
| AAIB12_RS00390 (AAIB12_00390) | - | 61126..63162 (-) | 2037 | WP_010907417.1 | integrase | - |
| AAIB12_RS00395 (AAIB12_00395) | - | 63165..64685 (-) | 1521 | WP_010907418.1 | site-specific integrase | - |
| AAIB12_RS00400 (AAIB12_00400) | - | 64672..65958 (-) | 1287 | WP_005631039.1 | site-specific integrase | - |
| AAIB12_RS00405 (AAIB12_00405) | ssb | 66102..66554 (-) | 453 | WP_014390703.1 | single-stranded DNA-binding protein | Machinery gene |
| AAIB12_RS00410 (AAIB12_00410) | - | 66565..67266 (-) | 702 | WP_014390704.1 | ERF family protein | - |
| AAIB12_RS00415 (AAIB12_00415) | - | 67309..67959 (-) | 651 | WP_267174441.1 | ribonuclease H-like domain-containing protein | - |
| AAIB12_RS00420 (AAIB12_00420) | - | 67962..68549 (-) | 588 | WP_343298258.1 | AP2 domain-containing protein | - |
| AAIB12_RS00425 (AAIB12_00425) | - | 68723..68884 (-) | 162 | WP_167383025.1 | hypothetical protein | - |
| AAIB12_RS00430 (AAIB12_00430) | - | 68887..69087 (-) | 201 | WP_143931649.1 | hypothetical protein | - |
| AAIB12_RS00435 (AAIB12_00435) | - | 69050..69298 (-) | 249 | WP_078737825.1 | hypothetical protein | - |
| AAIB12_RS00440 (AAIB12_00440) | - | 69384..70067 (-) | 684 | WP_078737824.1 | BRO family protein | - |
| AAIB12_RS00445 (AAIB12_00445) | - | 70349..70891 (-) | 543 | WP_078737823.1 | DUF4760 domain-containing protein | - |
| AAIB12_RS00455 (AAIB12_00455) | - | 71623..71817 (+) | 195 | WP_078737822.1 | hypothetical protein | - |
| AAIB12_RS00460 (AAIB12_00460) | - | 71798..71968 (-) | 171 | WP_155295599.1 | hypothetical protein | - |
| AAIB12_RS00465 (AAIB12_00465) | - | 71981..72211 (-) | 231 | WP_078737821.1 | hypothetical protein | - |
| AAIB12_RS00470 (AAIB12_00470) | - | 72453..72662 (-) | 210 | WP_005756656.1 | hypothetical protein | - |
| AAIB12_RS00475 (AAIB12_00475) | - | 72675..72842 (+) | 168 | WP_005756653.1 | DUF1508 domain-containing protein | - |
| AAIB12_RS00480 (AAIB12_00480) | - | 73233..73490 (+) | 258 | WP_078737820.1 | hypothetical protein | - |
| AAIB12_RS00485 (AAIB12_00485) | - | 73483..73875 (-) | 393 | WP_078737819.1 | hypothetical protein | - |
| AAIB12_RS00490 (AAIB12_00490) | - | 73875..74228 (-) | 354 | WP_078737818.1 | DUF4325 domain-containing protein | - |
| AAIB12_RS00495 (AAIB12_00495) | - | 74203..75129 (-) | 927 | WP_078737817.1 | hypothetical protein | - |
| AAIB12_RS00500 (AAIB12_00500) | - | 75262..75939 (-) | 678 | WP_014390718.1 | XRE family transcriptional regulator | - |
| AAIB12_RS00505 (AAIB12_00505) | - | 76063..76260 (+) | 198 | WP_014390719.1 | helix-turn-helix domain-containing protein | - |
| AAIB12_RS00510 (AAIB12_00510) | - | 76310..76762 (+) | 453 | WP_014390720.1 | phage regulatory CII family protein | - |
| AAIB12_RS00515 (AAIB12_00515) | - | 76814..77497 (+) | 684 | WP_078737816.1 | phage antirepressor KilAC domain-containing protein | - |
| AAIB12_RS00520 (AAIB12_00520) | - | 77494..77847 (+) | 354 | WP_014390722.1 | HNH endonuclease signature motif containing protein | - |
| AAIB12_RS00525 (AAIB12_00525) | - | 77849..78751 (+) | 903 | WP_078802168.1 | hypothetical protein | - |
| AAIB12_RS00530 (AAIB12_00530) | - | 78751..79446 (+) | 696 | WP_078802167.1 | replication protein P | - |
| AAIB12_RS00535 (AAIB12_00535) | - | 79439..79969 (+) | 531 | WP_078801820.1 | MT-A70 family methyltransferase | - |
| AAIB12_RS00540 (AAIB12_00540) | - | 79978..80415 (+) | 438 | WP_064965060.1 | DUF1367 family protein | - |
| AAIB12_RS00545 (AAIB12_00545) | - | 80575..80790 (+) | 216 | WP_078801821.1 | hypothetical protein | - |
| AAIB12_RS00550 (AAIB12_00550) | - | 80783..81385 (+) | 603 | WP_078801822.1 | recombination protein NinG | - |
| AAIB12_RS00555 (AAIB12_00555) | - | 81387..81848 (+) | 462 | WP_078801823.1 | antiterminator Q family protein | - |
| AAIB12_RS00565 (AAIB12_00565) | - | 82175..82435 (+) | 261 | WP_014391475.1 | holin | - |
| AAIB12_RS00570 (AAIB12_00570) | - | 82432..82962 (+) | 531 | WP_078737811.1 | lysozyme | - |
| AAIB12_RS00575 (AAIB12_00575) | - | 82935..83258 (+) | 324 | WP_078801840.1 | DUF2570 family protein | - |
| AAIB12_RS00580 (AAIB12_00580) | - | 83480..83914 (-) | 435 | WP_014390736.1 | type II toxin-antitoxin system HicB family antitoxin | - |
| AAIB12_RS00585 (AAIB12_00585) | - | 83943..84125 (-) | 183 | WP_016533497.1 | type II toxin-antitoxin system HicA family toxin | - |
| AAIB12_RS00590 (AAIB12_00590) | - | 84208..84705 (+) | 498 | WP_343298259.1 | helix-turn-helix domain-containing protein | - |
| AAIB12_RS00595 (AAIB12_00595) | - | 84689..85915 (+) | 1227 | WP_078801824.1 | PBSX family phage terminase large subunit | - |
| AAIB12_RS00600 (AAIB12_00600) | - | 85930..87375 (+) | 1446 | WP_014390739.1 | phage portal protein | - |
| AAIB12_RS00605 (AAIB12_00605) | - | 87329..88300 (+) | 972 | WP_014390740.1 | phage minor head protein | - |
| AAIB12_RS00610 (AAIB12_00610) | - | 88315..89661 (+) | 1347 | WP_014390741.1 | DUF2213 domain-containing protein | - |
| AAIB12_RS00615 (AAIB12_00615) | - | 89661..90095 (+) | 435 | WP_014390742.1 | hypothetical protein | - |
| AAIB12_RS00620 (AAIB12_00620) | - | 90107..91105 (+) | 999 | WP_078801825.1 | major capsid protein | - |
| AAIB12_RS00625 (AAIB12_00625) | - | 91116..91466 (+) | 351 | WP_250012870.1 | hypothetical protein | - |
| AAIB12_RS00630 (AAIB12_00630) | - | 91447..91815 (+) | 369 | WP_014390745.1 | hypothetical protein | - |
| AAIB12_RS00635 (AAIB12_00635) | - | 91818..92162 (+) | 345 | WP_014390746.1 | hypothetical protein | - |
| AAIB12_RS00640 (AAIB12_00640) | - | 92167..92538 (+) | 372 | WP_014390747.1 | hypothetical protein | - |
| AAIB12_RS00645 (AAIB12_00645) | - | 92535..92906 (+) | 372 | WP_014390748.1 | hypothetical protein | - |
| AAIB12_RS00650 (AAIB12_00650) | - | 92918..93400 (+) | 483 | WP_014390749.1 | phage tail protein | - |
| AAIB12_RS00655 (AAIB12_00655) | - | 93454..94125 (+) | 672 | WP_014390750.1 | DUF6246 family protein | - |
| AAIB12_RS00660 (AAIB12_00660) | - | 94202..94558 (+) | 357 | WP_014390751.1 | TM2 domain-containing protein | - |
| AAIB12_RS00665 (AAIB12_00665) | - | 94634..95452 (-) | 819 | WP_014390752.1 | hypothetical protein | - |
| AAIB12_RS00670 (AAIB12_00670) | - | 95791..96615 (+) | 825 | WP_014390754.1 | phage antirepressor N-terminal domain-containing protein | - |
| AAIB12_RS00675 (AAIB12_00675) | - | 96667..99111 (+) | 2445 | WP_014390755.1 | phage tail length tape measure family protein | - |
| AAIB12_RS00680 (AAIB12_00680) | - | 99114..99443 (+) | 330 | WP_014390756.1 | phage tail protein | - |
| AAIB12_RS00685 (AAIB12_00685) | - | 99572..100276 (+) | 705 | WP_078801828.1 | phage minor tail protein L | - |
| AAIB12_RS00690 (AAIB12_00690) | - | 100281..101024 (+) | 744 | WP_078801829.1 | C40 family peptidase | - |
| AAIB12_RS00695 (AAIB12_00695) | - | 100967..101587 (+) | 621 | WP_014667799.1 | tail assembly protein | - |
| AAIB12_RS00700 (AAIB12_00700) | - | 101591..106594 (+) | 5004 | WP_343298260.1 | phage tail protein | - |
| AAIB12_RS00705 (AAIB12_00705) | - | 106642..106965 (+) | 324 | WP_014667801.1 | hypothetical protein | - |
| AAIB12_RS00710 (AAIB12_00710) | - | 107356..108102 (-) | 747 | WP_014390762.1 | hypothetical protein | - |
| AAIB12_RS00715 (AAIB12_00715) | - | 108102..108614 (-) | 513 | WP_014390763.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 150 a.a. Molecular weight: 17063.94 Da Isoelectric Point: 7.9707
>NTDB_id=993507 AAIB12_RS00405 WP_014390703.1 66102..66554(-) (ssb) [Pasteurella multocida strain Pm3]
MAGVNKVIIVGNLGNDPEIRTMPNGDPVAKISVATSESWIDKNTGERKTQTEWHSIVFYRRQAEICGQYLKKGSKVYVEG
RLRTRKWQDQNGQDRYTTEIQGDVLQMLDSRQDSQQQQAQAPQNNAYANAKAGKPVQQQAYNFEEDNIPF
MAGVNKVIIVGNLGNDPEIRTMPNGDPVAKISVATSESWIDKNTGERKTQTEWHSIVFYRRQAEICGQYLKKGSKVYVEG
RLRTRKWQDQNGQDRYTTEIQGDVLQMLDSRQDSQQQQAQAPQNNAYANAKAGKPVQQQAYNFEEDNIPF
Nucleotide
Download Length: 453 bp
>NTDB_id=993507 AAIB12_RS00405 WP_014390703.1 66102..66554(-) (ssb) [Pasteurella multocida strain Pm3]
ATGGCAGGTGTTAATAAAGTAATTATCGTGGGAAATTTGGGAAACGATCCTGAAATCCGCACAATGCCAAATGGCGACCC
TGTTGCAAAAATCAGCGTCGCAACCAGTGAAAGCTGGATCGACAAAAATACTGGCGAACGAAAAACACAAACTGAATGGC
ATTCTATCGTGTTCTATCGTCGCCAAGCAGAAATTTGCGGTCAGTATCTCAAAAAAGGATCGAAAGTGTATGTGGAAGGG
CGTTTAAGAACTCGTAAATGGCAAGACCAAAACGGGCAAGACCGCTACACCACAGAGATTCAAGGCGACGTATTACAAAT
GCTAGACAGTCGCCAAGATTCACAGCAACAGCAAGCACAGGCACCACAAAATAATGCTTATGCGAATGCGAAAGCTGGAA
AGCCTGTACAGCAACAAGCATATAACTTTGAAGAGGATAATATCCCATTCTGA
ATGGCAGGTGTTAATAAAGTAATTATCGTGGGAAATTTGGGAAACGATCCTGAAATCCGCACAATGCCAAATGGCGACCC
TGTTGCAAAAATCAGCGTCGCAACCAGTGAAAGCTGGATCGACAAAAATACTGGCGAACGAAAAACACAAACTGAATGGC
ATTCTATCGTGTTCTATCGTCGCCAAGCAGAAATTTGCGGTCAGTATCTCAAAAAAGGATCGAAAGTGTATGTGGAAGGG
CGTTTAAGAACTCGTAAATGGCAAGACCAAAACGGGCAAGACCGCTACACCACAGAGATTCAAGGCGACGTATTACAAAT
GCTAGACAGTCGCCAAGATTCACAGCAACAGCAAGCACAGGCACCACAAAATAATGCTTATGCGAATGCGAAAGCTGGAA
AGCCTGTACAGCAACAAGCATATAACTTTGAAGAGGATAATATCCCATTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
62.222 |
100 |
0.747 |
| ssb | Vibrio cholerae strain A1552 |
53.957 |
92.667 |
0.5 |
| ssb | Neisseria gonorrhoeae MS11 |
46.715 |
91.333 |
0.427 |
| ssb | Neisseria meningitidis MC58 |
46.715 |
91.333 |
0.427 |