Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   E0E10_RS09095 Genome accession   NZ_LR027878
Coordinates   1775103..1776107 (-) Length   334 a.a.
NCBI ID   WP_001005767.1    Uniprot ID   Q6GG63
Organism   Staphylococcus aureus strain BPH2003 isolate BPH2003     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1770103..1781107
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E0E10_RS09080 yajC 1772635..1772895 (-) 261 WP_001160682.1 preprotein translocase subunit YajC -
  E0E10_RS09085 tgt 1772914..1774053 (-) 1140 WP_001112045.1 tRNA guanosine(34) transglycosylase Tgt -
  E0E10_RS09090 queA 1774076..1775101 (-) 1026 WP_001019171.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  E0E10_RS09095 ruvB 1775103..1776107 (-) 1005 WP_001005767.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  E0E10_RS09100 ruvA 1776139..1776741 (-) 603 WP_000271544.1 Holliday junction branch migration protein RuvA Machinery gene
  E0E10_RS09105 - 1776755..1777210 (-) 456 WP_000368902.1 ACT domain-containing protein -
  E0E10_RS09110 obgE 1777223..1778515 (-) 1293 WP_000496100.1 GTPase ObgE -
  E0E10_RS09115 rpmA 1778870..1779154 (-) 285 WP_000916187.1 50S ribosomal protein L27 -
  E0E10_RS09120 - 1779166..1779486 (-) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  E0E10_RS09125 rplU 1779492..1779800 (-) 309 WP_000457385.1 50S ribosomal protein L21 -
  E0E10_RS09130 mreD 1779967..1780498 (-) 532 Protein_1717 rod shape-determining protein MreD -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 37718.00 Da        Isoelectric Point: 5.0865

>NTDB_id=993486 E0E10_RS09095 WP_001005767.1 1775103..1776107(-) (ruvB) [Staphylococcus aureus strain BPH2003 isolate BPH2003]
MNERMVDQSMHSEETDFELSLRPTRLRQYIGQNSIKSNLEVFIKAAKLRHEPLDHVLLFGPPGLGKTTLSNIIANEMEVN
IRTVSGPSLERPGDLAAILSGLQPGDVLFIDEIHRLSSVVEEVLYPAMEDFFLDIIIGKGDEARSIRIDLPPFTLVGATT
RAGSLTGPLRDRFGVHLRLEYYNESDLKEIIIRTAEVLGTGIDEESAIELAKRSRGTPRVANRLLKRVRDFQQVNEDEQI
YIETTKHALGLLQVDQHGLDYIDHKMMNCIIKQYNGGPVGLDTIAVTIGEERITIEDVYEPFLIQKGFLERTPRGRKATP
LAYEHFAKSNEERE

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=993486 E0E10_RS09095 WP_001005767.1 1775103..1776107(-) (ruvB) [Staphylococcus aureus strain BPH2003 isolate BPH2003]
ATGAATGAGCGTATGGTTGATCAATCAATGCATAGTGAAGAAACTGATTTCGAATTGTCGCTTAGACCTACGAGATTACG
ACAATATATTGGTCAAAATTCAATAAAAAGTAATTTAGAAGTATTTATTAAAGCGGCTAAACTTCGTCATGAACCATTAG
ATCATGTATTGCTTTTTGGCCCCCCTGGATTAGGTAAGACAACATTATCTAATATCATTGCCAATGAAATGGAAGTTAAT
ATACGTACAGTATCAGGGCCTTCATTAGAAAGACCTGGTGATTTGGCTGCAATTTTATCAGGACTTCAACCTGGAGATGT
TTTGTTTATTGATGAAATACACAGACTGAGTAGTGTTGTTGAAGAAGTGTTATACCCTGCAATGGAAGATTTCTTTTTAG
ATATTATCATTGGTAAAGGCGATGAGGCTAGAAGTATCCGTATCGACTTACCTCCATTCACTTTGGTAGGTGCAACAACG
CGAGCTGGCAGCTTAACAGGTCCACTAAGGGATCGATTTGGTGTGCACTTAAGATTAGAATATTATAACGAATCAGATTT
AAAAGAAATCATTATTAGAACAGCTGAGGTTTTAGGCACAGGTATTGATGAAGAAAGTGCCATTGAACTTGCTAAACGTT
CTAGAGGGACTCCAAGAGTAGCAAATCGACTATTGAAGCGGGTAAGAGACTTCCAGCAAGTGAATGAAGATGAACAAATA
TACATTGAAACAACGAAGCACGCATTAGGTTTACTTCAAGTTGATCAACACGGACTAGATTACATTGATCATAAAATGAT
GAACTGTATTATTAAGCAGTATAATGGCGGACCTGTTGGTTTAGATACGATTGCCGTAACAATTGGTGAAGAACGTATTA
CAATTGAGGACGTTTATGAGCCATTTCTTATTCAGAAAGGCTTTTTAGAACGTACGCCACGTGGCAGAAAAGCAACACCA
TTAGCTTATGAACATTTTGCAAAGTCGAATGAGGAGAGAGAATAA

Domains

Predicted by InterProScan.

RuvB AAA lid domain (AAA_lid_4)

(182-255)

RuvB C-terminal winged helix domain (WHD_RuvB)

(257-326)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(21-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q6GG63

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

65.951

97.605

0.644
  ruvB Streptococcus pneumoniae TIGR4

58.182

98.802

0.575
  ruvB Streptococcus pneumoniae R6

57.879

98.802

0.572
  ruvB Streptococcus pneumoniae D39

57.879

98.802

0.572
  ruvB Helicobacter pylori 26695

56.481

97.006

0.548
  ruvB Synechocystis sp. PCC 6803

53.75

95.808

0.515