Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   AAHT65_RS06380 Genome accession   NZ_CP154443
Coordinates   1241622..1242137 (-) Length   171 a.a.
NCBI ID   WP_003326057.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain SW     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1236622..1247137
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAHT65_RS06350 (AAHT65_06350) - 1236944..1237510 (-) 567 WP_343311175.1 bifunctional transcriptional activator/DNA repair enzyme AdaA -
  AAHT65_RS06355 (AAHT65_06355) - 1237629..1238387 (-) 759 WP_343311176.1 exodeoxyribonuclease III -
  AAHT65_RS06360 (AAHT65_06360) - 1238586..1239506 (+) 921 WP_343311177.1 EamA family transporter -
  AAHT65_RS06365 (AAHT65_06365) - 1239640..1240266 (+) 627 WP_063638405.1 GntR family transcriptional regulator -
  AAHT65_RS06370 (AAHT65_06370) - 1240369..1241208 (-) 840 WP_343311178.1 MBL fold metallo-hydrolase -
  AAHT65_RS06375 (AAHT65_06375) rpsR 1241339..1241578 (-) 240 WP_003326058.1 30S ribosomal protein S18 -
  AAHT65_RS06380 (AAHT65_06380) ssbA 1241622..1242137 (-) 516 WP_003326057.1 single-stranded DNA-binding protein SsbA Machinery gene
  AAHT65_RS06385 (AAHT65_06385) rpsF 1242177..1242464 (-) 288 WP_003326056.1 30S ribosomal protein S6 -
  AAHT65_RS06390 (AAHT65_06390) ychF 1242577..1243677 (-) 1101 WP_343311179.1 redox-regulated ATPase YchF -
  AAHT65_RS06395 (AAHT65_06395) - 1243804..1245807 (-) 2004 WP_343311180.1 molybdopterin-dependent oxidoreductase -
  AAHT65_RS06400 (AAHT65_06400) - 1245857..1246063 (-) 207 WP_258728467.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18630.21 Da        Isoelectric Point: 4.7621

>NTDB_id=993416 AAHT65_RS06380 WP_003326057.1 1241622..1242137(-) (ssbA) [Bacillus atrophaeus strain SW]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKSGGGSGSGGYNEGNSGGQYFGGGQNDNPFGGNQNNQKRNQGNSFNDDPFANDGK
PIDISDDDLPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=993416 AAHT65_RS06380 WP_003326057.1 1241622..1242137(-) (ssbA) [Bacillus atrophaeus strain SW]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCTAACGGTGCGGCTGTTGC
CACGTTTACTCTTGCGGTGAATCGTACGTTTACGAATCAGTCAGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCCTTAAAAAAGGAAGCCTTGCAGGCGTGGATGGCCGTTTACAAACAAGA
AATTACGAAAACCAGCAGGGACAGCGCGTCTTCGTGACCGAAGTTCAGGCTGAAAGTGTTCAGTTTCTTGAGCCGAAAAG
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAATAGCGGAGGCCAATACTTTGGCGGAGGCCAAAATGATAATC
CATTTGGCGGAAATCAAAACAATCAGAAACGAAATCAAGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGCAAA
CCGATTGACATCTCAGATGATGATCTTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

98.256

100

0.988
  ssb Latilactobacillus sakei subsp. sakei 23K

57.955

100

0.596
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.988

0.398
  ssb Glaesserella parasuis strain SC1401

36.612

100

0.392

Multiple sequence alignment