Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   AAID36_RS01510 Genome accession   NZ_CP154372
Coordinates   320637..322802 (+) Length   721 a.a.
NCBI ID   WP_001017040.1    Uniprot ID   A0A0J0ZLY6
Organism   Acinetobacter baumannii strain NCSR_106     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 315637..327802
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAID36_RS01490 (AAID36_01490) pilM 317600..318658 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  AAID36_RS01495 (AAID36_01495) pilN 318658..319299 (+) 642 WP_000201229.1 PilN domain-containing protein Machinery gene
  AAID36_RS01500 (AAID36_01500) pilO 319296..320036 (+) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  AAID36_RS01505 (AAID36_01505) pilP 320047..320574 (+) 528 WP_000695059.1 pilus assembly protein PilP Machinery gene
  AAID36_RS01510 (AAID36_01510) pilQ 320637..322802 (+) 2166 WP_001017040.1 type IV pilus secretin PilQ family protein Machinery gene
  AAID36_RS01515 (AAID36_01515) aroK 322814..323383 (+) 570 WP_000643712.1 shikimate kinase AroK -
  AAID36_RS01520 (AAID36_01520) aroB 323412..324494 (+) 1083 WP_001193997.1 3-dehydroquinate synthase -
  AAID36_RS01525 (AAID36_01525) - 324510..325385 (+) 876 WP_000218810.1 hypothetical protein -

Sequence

Protein


Download         Length: 721 a.a.        Molecular weight: 77919.34 Da        Isoelectric Point: 6.5404

>NTDB_id=993089 AAID36_RS01510 WP_001017040.1 320637..322802(+) (pilQ) [Acinetobacter baumannii strain NCSR_106]
MNHVFRQFSMGAVAIAIMQAASAQVSMTNIVPMQIAGQGTEIRVMFNGLPPQPQAYQLENPSRLILDFDKVQQGLKQSKI
SVATNEASSVDVTSDDQRSRLTVNLKDAGAFTTRVEGNTFILKINSAQTSNKPLPVVSAQPQGVSNIGFQRGSQGEGLVV
VDLLGSNTPVDVQQQGSKVVIRTIGTKIPTHLARRLNVNDFATPVSSIDAYNDKGVGVITIQSSGSYEYMAYQAENKLTI
SLKRPQDKNVTSLYKTPNYSGNKLSLDFQDIEVRRVLQLLADFTGINMVAADSVQGNITLRLKDVPWDQALDIILKTKNL
DKRRNGNVIWIAPVAELIKAEEEEAKAVAQSVKLAPLQTEYIQLKYAKAGDIMGLITQGSNNSNGLQHTSGGGTSTSTNL
NTGVDSLGNNVGSLLSPRGTITQDDRTNTLIINDTAQSIDQIRKMIDLLDVQVKQVMVEARIVRASTSFTKELGVKWGIL
SQGITNNNNLLVGGSETTLWNLREPKKDETTGGYKYTIERPDNLNVDLGVSNPAGSIAFGLISMSDFMLDLELSALQADG
YGEVISTPKVMTADKQTAKVATGQQVPYQSTTNSAAGSTATTSFKDALLSLNVTPSITPDGKIQMKLDISKDSVAGAAPN
GELILNKNNINTNVLVDNGETVILGGVFEQTTMNSQTKVPFFGDIPVVGRLFRKDVKSDDKQELLIFVTPRIVNDTLARN
H

Nucleotide


Download         Length: 2166 bp        

>NTDB_id=993089 AAID36_RS01510 WP_001017040.1 320637..322802(+) (pilQ) [Acinetobacter baumannii strain NCSR_106]
ATGAATCACGTATTCCGTCAGTTTTCTATGGGGGCTGTAGCTATTGCGATTATGCAGGCTGCATCTGCACAGGTCAGCAT
GACCAATATTGTACCAATGCAAATTGCAGGTCAGGGCACAGAAATTAGAGTCATGTTTAATGGCTTGCCACCACAACCAC
AAGCTTACCAACTTGAAAATCCTTCACGTTTAATCCTTGATTTTGATAAGGTACAGCAAGGTTTAAAACAGTCTAAAATT
AGTGTTGCAACTAATGAGGCAAGTTCTGTAGATGTTACTTCAGATGACCAGCGCTCACGTTTAACTGTAAACCTAAAAGA
TGCTGGAGCATTTACAACACGAGTCGAAGGCAATACTTTCATTTTAAAAATTAATTCTGCTCAAACAAGTAATAAGCCGC
TACCTGTGGTCTCAGCACAACCACAGGGAGTTTCAAATATTGGCTTTCAGCGTGGTAGTCAGGGAGAAGGCCTGGTTGTT
GTAGATCTTTTAGGAAGTAATACGCCTGTAGATGTTCAGCAGCAGGGTAGTAAAGTCGTTATAAGAACAATAGGTACAAA
AATCCCGACACATTTAGCACGTCGCTTAAATGTAAATGATTTTGCAACCCCCGTTTCAAGTATCGATGCTTATAATGATA
AAGGGGTTGGTGTAATAACTATCCAGTCCTCTGGTAGCTATGAATATATGGCCTATCAGGCAGAGAATAAGCTCACGATC
AGTTTGAAACGTCCCCAAGATAAAAATGTTACCTCTTTATATAAAACGCCGAATTATTCAGGAAATAAACTTTCATTAGA
CTTCCAAGATATTGAAGTACGTCGTGTGTTGCAATTACTTGCTGATTTTACAGGCATCAATATGGTAGCTGCTGATAGTG
TACAAGGTAATATCACACTACGTTTAAAAGATGTACCTTGGGATCAGGCTCTTGATATTATTTTAAAAACTAAAAATCTT
GATAAACGCCGTAACGGCAATGTGATTTGGATTGCTCCAGTTGCAGAATTGATTAAGGCGGAAGAAGAAGAAGCGAAAGC
TGTTGCACAAAGTGTCAAACTTGCACCCTTACAGACTGAGTATATTCAACTGAAGTATGCTAAAGCTGGCGATATTATGG
GTCTCATTACACAAGGTTCAAATAATAGTAATGGCTTACAGCATACTTCTGGTGGAGGGACCTCAACTTCAACCAATTTA
AATACTGGAGTTGATAGTCTAGGCAATAATGTGGGTAGTTTGCTTAGCCCGCGTGGCACTATTACTCAAGATGATCGAAC
CAATACTCTTATTATTAACGATACTGCTCAGTCAATTGATCAAATTCGTAAAATGATTGACTTGCTTGATGTGCAAGTTA
AACAGGTTATGGTTGAAGCACGTATTGTGAGAGCCTCTACGTCATTTACCAAAGAACTTGGTGTGAAGTGGGGCATTCTG
TCGCAAGGTATTACCAATAACAACAATTTGCTGGTTGGCGGTAGTGAAACAACTTTATGGAATTTACGCGAACCGAAGAA
AGATGAAACTACAGGTGGGTATAAATATACGATTGAGCGCCCAGATAACTTAAATGTGGATTTAGGAGTTTCTAATCCTG
CAGGAAGTATTGCTTTTGGCTTGATTAGTATGTCTGACTTTATGTTAGATCTTGAATTGTCTGCTTTACAAGCGGATGGT
TATGGTGAGGTTATTTCTACCCCTAAAGTCATGACTGCCGATAAACAAACAGCGAAAGTTGCAACTGGTCAACAAGTTCC
ATATCAATCTACAACTAACTCTGCAGCAGGTTCAACTGCTACAACATCTTTTAAAGATGCTTTGCTGAGTTTAAATGTGA
CACCAAGTATTACACCTGATGGCAAGATTCAAATGAAGTTGGATATTTCTAAGGATTCTGTAGCGGGTGCGGCTCCAAAT
GGAGAGTTGATTTTAAATAAAAATAATATCAACACCAATGTATTGGTAGATAATGGCGAAACTGTCATTTTGGGTGGTGT
TTTTGAGCAAACAACTATGAATTCACAAACCAAAGTTCCTTTCTTTGGTGATATTCCTGTTGTTGGGCGTTTATTTAGAA
AAGATGTAAAGTCTGATGATAAACAAGAGTTGCTGATTTTCGTTACACCACGAATTGTTAATGACACTTTAGCGAGAAAT
CATTAA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(291-333)

AMIN domain (AMIN)

(39-121)

Bacterial type II/III secretion system short domain (Secretin_N)

(360-455)

Bacterial type II and III secretion system protein (Secretin)

(555-713)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J0ZLY6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

99.861

100

0.999
  pilQ Acinetobacter baumannii strain A118

99.723

100

0.997
  comQ Acinetobacter baylyi ADP1

75.242

100

0.755
  pilQ Pseudomonas aeruginosa PAK

40.559

99.168

0.402

Multiple sequence alignment