Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   ACKTSO_RS12385 Genome accession   NZ_AP035889
Coordinates   2552740..2553396 (+) Length   218 a.a.
NCBI ID   WP_013745755.1    Uniprot ID   -
Organism   Gallibacterium anatis strain SMUHGa01     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2547740..2558396
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKTSO_RS12360 (SMUG_24070) radC 2549311..2549976 (-) 666 WP_407902584.1 DNA repair protein RadC Machinery gene
  ACKTSO_RS12365 (SMUG_24080) coaBC 2550177..2551406 (+) 1230 WP_407902585.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  ACKTSO_RS12370 (SMUG_24090) dut 2551393..2551845 (+) 453 WP_018346279.1 dUTP diphosphatase -
  ACKTSO_RS12375 (SMUG_24100) slmA 2551820..2552449 (+) 630 WP_039146767.1 nucleoid occlusion factor SlmA -
  ACKTSO_RS12380 (SMUG_24110) - 2552452..2552679 (+) 228 WP_013745756.1 YheU family protein -
  ACKTSO_RS12385 (SMUG_24120) crp 2552740..2553396 (+) 657 WP_013745755.1 cAMP-activated global transcriptional regulator CRP Regulator
  ACKTSO_RS12390 (SMUG_24130) - 2553418..2554173 (+) 756 WP_407902586.1 methyltransferase domain-containing protein -
  ACKTSO_RS12395 (SMUG_24140) tsaA 2554215..2554922 (-) 708 WP_285096304.1 tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO -
  ACKTSO_RS12400 (SMUG_24150) - 2555030..2555935 (+) 906 WP_039081209.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  ACKTSO_RS12405 (SMUG_24160) rraA 2555967..2556461 (+) 495 WP_013745751.1 ribonuclease E activity regulator RraA -
  ACKTSO_RS12410 (SMUG_24170) - 2556550..2556930 (+) 381 WP_335796787.1 VOC family protein -
  ACKTSO_RS12415 (SMUG_24180) - 2556973..2558298 (-) 1326 WP_013745749.1 hemolysin family protein -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 24627.44 Da        Isoelectric Point: 6.7520

>NTDB_id=99305 ACKTSO_RS12385 WP_013745755.1 2552740..2553396(+) (crp) [Gallibacterium anatis strain SMUHGa01]
MDMKEEAEVQQEEATTDPTLEWFLSHCHIHKYPAKSTLINAGEKAETLYYLIKGSIAVSVKDDEGKEMILSYLSQGDFFG
ELGLFEDVKVRSAWVKAKTTCEVAEISYKKFRQLIQVNPEILMYLTSQLARRLQNTSKQVSNLAFLDVTGRIAQTLLHLA
RMPDAMTHPEGMQIKITRQEIGQMVGCSRETVGRILKMLEDQGLISAHGKTIVVYGTR

Nucleotide


Download         Length: 657 bp        

>NTDB_id=99305 ACKTSO_RS12385 WP_013745755.1 2552740..2553396(+) (crp) [Gallibacterium anatis strain SMUHGa01]
ATGGATATGAAAGAAGAAGCAGAAGTACAACAGGAAGAGGCGACAACGGATCCTACGTTAGAGTGGTTTTTATCGCATTG
TCATATTCATAAATATCCGGCGAAAAGCACCTTAATTAATGCCGGTGAAAAGGCAGAAACGCTCTATTATTTAATTAAAG
GATCGATTGCGGTTTCAGTCAAAGACGATGAAGGCAAAGAGATGATTTTGTCTTATTTGAGCCAAGGCGATTTTTTTGGC
GAGCTTGGTCTATTTGAAGATGTAAAAGTGCGCAGCGCGTGGGTTAAAGCGAAAACAACTTGCGAAGTGGCTGAAATTTC
TTATAAAAAATTCCGTCAACTGATTCAGGTGAATCCTGAAATTTTAATGTATTTGACCTCACAGTTGGCTCGTCGCTTGC
AAAACACTTCAAAACAGGTGAGTAATTTGGCGTTTCTTGATGTTACCGGTCGTATTGCTCAAACCTTGTTGCATTTGGCG
AGAATGCCGGATGCGATGACACATCCGGAAGGAATGCAGATTAAAATTACCCGTCAGGAGATCGGACAGATGGTCGGCTG
TTCGCGTGAAACGGTGGGGCGAATTTTAAAAATGCTGGAAGACCAAGGCTTGATTTCTGCACACGGTAAAACTATTGTTG
TTTATGGAACCAGATAA

Domains

Predicted by InterProScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(150-214)

Cyclic nucleotide-binding domain (cNMP_binding)

(30-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

83.251

93.119

0.775
  crp Haemophilus influenzae Rd KW20

79.904

95.872

0.766
  crp Acinetobacter baumannii D1279779

46.734

91.284

0.427

Multiple sequence alignment