Detailed information NTG0099304

Bioinformatically predicted

Overview

• Name: radC
• Type: Machinery gene
• Locus tag: ACKTSO_RS12360
• Genome accession: NZ_AP035889
• Coordinates: 2549311..2549976 (-)
• Length: 221 a.a.
• NCBI ID: WP_407902584.1
• Uniprot ID: -
• Organism: Gallibacterium anatis strain SMUHGa01
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2544311..2554976

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACKTSO_RS12345 (SMUG_24040)	-	2545994..2546506 (+)	513	WP_302508719.1	SprT family zinc-dependent metalloprotease	-
ACKTSO_RS12350 (SMUG_24050)	-	2546571..2547179 (+)	609	WP_407902583.1	opacity family porin	-
ACKTSO_RS12355 (SMUG_24060)	htpG	2547337..2549223 (+)	1887	WP_335793261.1	molecular chaperone HtpG	-
ACKTSO_RS12360 (SMUG_24070)	radC	2549311..2549976 (-)	666	WP_407902584.1	DNA repair protein RadC	Machinery gene
ACKTSO_RS12365 (SMUG_24080)	coaBC	2550177..2551406 (+)	1230	WP_407902585.1	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	-
ACKTSO_RS12370 (SMUG_24090)	dut	2551393..2551845 (+)	453	WP_018346279.1	dUTP diphosphatase	-
ACKTSO_RS12375 (SMUG_24100)	slmA	2551820..2552449 (+)	630	WP_039146767.1	nucleoid occlusion factor SlmA	-
ACKTSO_RS12380 (SMUG_24110)	-	2552452..2552679 (+)	228	WP_013745756.1	YheU family protein	-
ACKTSO_RS12385 (SMUG_24120)	crp	2552740..2553396 (+)	657	WP_013745755.1	cAMP-activated global transcriptional regulator CRP	Regulator
ACKTSO_RS12390 (SMUG_24130)	-	2553418..2554173 (+)	756	WP_407902586.1	methyltransferase domain-containing protein	-
ACKTSO_RS12395 (SMUG_24140)	tsaA	2554215..2554922 (-)	708	WP_285096304.1	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	-

Sequence

Protein

• Length: 221 a.a.
• Molecular weight: 25305.39 Da
• Isoelectric Point: 7.4243

>NTDB_id=99304 ACKTSO_RS12360 WP_407902584.1 2549311..2549976(-) (radC) [Gallibacterium anatis strain SMUHGa01]
MTELMPREKLLQQGADKLSDQELLAIFLRTGFKNCSVMTLAENSLHHFGSLRELLAASKEKFCEVKGLGVTQYIQLQACI
EMTKRYLAQEIKQQPLFNNIEFAKLYMQTELSHQQRELFVVLFLNNQHYLIEKETLFQGTINSTQVHPREIIKSALKYNA
AAIILAHNHPSGITTPSKEDIAVTEQIQQACKLIDVRVLDHLIIGKNQVFSFCEKGLIDFR

Nucleotide

• Length: 666 bp

>NTDB_id=99304 ACKTSO_RS12360 WP_407902584.1 2549311..2549976(-) (radC) [Gallibacterium anatis strain SMUHGa01]
ATGACCGAACTCATGCCGCGAGAAAAACTTTTGCAGCAAGGTGCTGATAAATTAAGCGATCAAGAATTATTAGCTATTTT
TTTACGCACCGGTTTTAAAAACTGTTCAGTTATGACATTGGCTGAAAACAGCCTGCATCATTTCGGATCTCTACGAGAAT
TATTAGCTGCTTCAAAAGAAAAATTCTGTGAAGTCAAAGGGTTAGGTGTAACACAATATATTCAGTTGCAAGCCTGTATC
GAAATGACCAAACGTTATTTGGCACAAGAAATCAAACAACAGCCCCTGTTTAATAATATTGAGTTTGCCAAACTTTATAT
GCAGACCGAATTATCCCATCAACAAAGAGAGCTTTTTGTTGTGCTTTTTCTGAATAATCAACACTATTTAATTGAAAAAG
AGACGTTATTCCAAGGCACCATTAACAGCACCCAAGTTCATCCACGAGAAATTATTAAATCGGCATTAAAATATAATGCC
GCTGCCATTATTTTGGCTCACAATCACCCTTCCGGCATTACAACGCCTAGTAAAGAAGATATTGCTGTTACCGAACAGAT
CCAACAGGCGTGCAAACTGATTGATGTCAGAGTATTGGATCATTTAATTATTGGCAAAAACCAGGTTTTCTCTTTTTGTG
AAAAAGGCTTAATTGATTTTCGATAA

Domains

Predicted by InterProScan.

• RadC-like JAB domain (RadC) (101-217)

• UPF0758 N-terminal (UPF0758_N) (5-73)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radC	Haemophilus influenzae Rd KW20	62.037	97.738	0.606
radC	Streptococcus gordonii str. Challis substr. CH1	40.845	96.38	0.394
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	41.232	95.475	0.394
radC	Streptococcus pneumoniae TIGR4	38.967	96.38	0.376
radC	Streptococcus pneumoniae R6	38.498	96.38	0.371
radC	Streptococcus pneumoniae D39	38.498	96.38	0.371