Detailed information
Bioinformatically predicted
Overview
| Name | comQ | Type | Machinery gene |
| Locus tag | ACKTSO_RS12060 | Genome accession | NZ_AP035889 |
| Coordinates | 2480992..2481288 (+) | Length | 98 a.a. |
| NCBI ID | WP_407902557.1 | Uniprot ID | - |
| Organism | Gallibacterium anatis strain SMUHGa01 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2475992..2486288
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACKTSO_RS12025 | - | 2476158..2476499 (+) | 342 | Protein_2328 | ACT domain-containing protein | - |
| ACKTSO_RS12030 | - | 2476842..2477735 (+) | 894 | WP_371128160.1 | sigma 54-interacting transcriptional regulator | - |
| ACKTSO_RS12035 (SMUG_23410) | sspA | 2477876..2478514 (+) | 639 | WP_013745826.1 | stringent starvation protein SspA | - |
| ACKTSO_RS12040 (SMUG_23420) | - | 2478524..2478985 (+) | 462 | WP_039085375.1 | ClpXP protease specificity-enhancing factor | - |
| ACKTSO_RS12045 (SMUG_23430) | - | 2479129..2479662 (+) | 534 | WP_039149627.1 | Tfp pilus assembly protein FimT/FimU | - |
| ACKTSO_RS12050 (SMUG_23440) | - | 2479652..2480374 (+) | 723 | WP_407902555.1 | type II secretion system protein J | - |
| ACKTSO_RS12055 (SMUG_23450) | - | 2480358..2481011 (+) | 654 | WP_407902556.1 | DUF2572 family protein | - |
| ACKTSO_RS12060 (SMUG_23460) | comQ | 2480992..2481288 (+) | 297 | WP_407902557.1 | DUF5374 domain-containing protein | Machinery gene |
| ACKTSO_RS12065 (SMUG_23470) | glpE | 2481348..2481674 (+) | 327 | WP_039084270.1 | thiosulfate sulfurtransferase GlpE | - |
| ACKTSO_RS12070 (SMUG_23480) | - | 2481825..2482346 (+) | 522 | WP_039140321.1 | NADPH-dependent FMN reductase | - |
| ACKTSO_RS12075 (SMUG_23490) | - | 2482343..2483248 (+) | 906 | WP_407902558.1 | pirin family protein | - |
| ACKTSO_RS12080 (SMUG_23500) | ppx | 2483332..2484816 (-) | 1485 | WP_407902559.1 | exopolyphosphatase | - |
Sequence
Protein
Download Length: 98 a.a. Molecular weight: 11146.01 Da Isoelectric Point: 8.5544
>NTDB_id=99302 ACKTSO_RS12060 WP_407902557.1 2480992..2481288(+) (comQ) [Gallibacterium anatis strain SMUHGa01]
MILAQHNLQGSAIINVLVTLMFLSLLLLSTQHWIKRQQQQTVNLWQATQALQIAENQWNLRVIGENCEKNVQQNGIVFNI
QCSGNQVVVHYPLGKIVL
MILAQHNLQGSAIINVLVTLMFLSLLLLSTQHWIKRQQQQTVNLWQATQALQIAENQWNLRVIGENCEKNVQQNGIVFNI
QCSGNQVVVHYPLGKIVL
Nucleotide
Download Length: 297 bp
>NTDB_id=99302 ACKTSO_RS12060 WP_407902557.1 2480992..2481288(+) (comQ) [Gallibacterium anatis strain SMUHGa01]
GTGATTTTGGCGCAACATAATCTGCAAGGCAGTGCGATTATCAATGTCTTGGTGACGCTGATGTTTTTGTCACTGTTATT
ACTGTCGACACAGCATTGGATTAAGCGGCAACAGCAGCAAACGGTAAATTTGTGGCAAGCGACACAAGCTTTGCAAATTG
CTGAAAATCAATGGAATTTAAGAGTCATCGGTGAAAATTGTGAAAAAAACGTACAACAAAACGGCATTGTTTTTAATATT
CAATGCAGCGGCAATCAGGTAGTGGTGCATTATCCGCTCGGAAAAATTGTGTTGTAA
GTGATTTTGGCGCAACATAATCTGCAAGGCAGTGCGATTATCAATGTCTTGGTGACGCTGATGTTTTTGTCACTGTTATT
ACTGTCGACACAGCATTGGATTAAGCGGCAACAGCAGCAAACGGTAAATTTGTGGCAAGCGACACAAGCTTTGCAAATTG
CTGAAAATCAATGGAATTTAAGAGTCATCGGTGAAAATTGTGAAAAAAACGTACAACAAAACGGCATTGTTTTTAATATT
CAATGCAGCGGCAATCAGGTAGTGGTGCATTATCCGCTCGGAAAAATTGTGTTGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comQ | Haemophilus influenzae Rd KW20 |
37.755 |
100 |
0.378 |