Detailed information NTG0099303

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: ACKTSO_RS12340
• Genome accession: NZ_AP035889
• Coordinates: 2543233..2545806 (-)
• Length: 857 a.a.
• NCBI ID: WP_039150994.1
• Uniprot ID: -
• Organism: Gallibacterium anatis strain SMUHGa01
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 2538233..2550806

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACKTSO_RS12330 (SMUG_24010)	-	2539198..2542446 (-)	3249	WP_407902581.1	type I restriction endonuclease subunit R	-
ACKTSO_RS12335 (SMUG_24020)	-	2542456..2543040 (-)	585	WP_407902582.1	restriction endonuclease subunit S	-
ACKTSO_RS12340 (SMUG_24030)	clpC	2543233..2545806 (-)	2574	WP_039150994.1	ATP-dependent chaperone ClpB	Regulator
ACKTSO_RS12345 (SMUG_24040)	-	2545994..2546506 (+)	513	WP_302508719.1	SprT family zinc-dependent metalloprotease	-
ACKTSO_RS12350 (SMUG_24050)	-	2546571..2547179 (+)	609	WP_407902583.1	opacity family porin	-
ACKTSO_RS12355 (SMUG_24060)	htpG	2547337..2549223 (+)	1887	WP_335793261.1	molecular chaperone HtpG	-
ACKTSO_RS12360 (SMUG_24070)	radC	2549311..2549976 (-)	666	WP_407902584.1	DNA repair protein RadC	Machinery gene

Sequence

Protein

• Length: 857 a.a.
• Molecular weight: 95541.13 Da
• Isoelectric Point: 5.3046

>NTDB_id=99303 ACKTSO_RS12340 WP_039150994.1 2543233..2545806(-) (clpC) [Gallibacterium anatis strain SMUHGa01]
MNFEKLTTKFQQALAEAQSLALGKDQQYIEPVHLMSALLNQEGGSVAPLLTASGVNVAQLRQAISQEIDRLPQVSGNGGD
VQLSPALARMLNLCDKFAQQRNDKFISSELFVLAALESSDKLSDVLKKSGLTRQNLLASIDKMRGGENVNDAGAEETRQA
LQKYTIDLTARAESGKLDPVIGRDDEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGEVPEGLRHKRVLSL
DMGALIAGAKYRGEFEERLKAVLNEIAKEEGRIILFIDEIHTMVGAGKTDGAMDAGNLLKPSLARGELHCVGATTLDEYR
QYIEKDAALERRFQKVLVDEPSVEDTIAILRGLKERYEIHHHVQITDPAIVAAATLSHRYISDRQLPDKAIDLIDEAASS
IRMEIDSKPQPLDKLERRIIQLKLEQQALQKEEDDASRKRLEMLEKELAEKEKEYSELEEVWKSEKAALSGAQHIKAELD
NAKTKMEQAYRAGDIAKMSELKYSTIPALEKQLEQAESAEGKEMSLLRYRVTDEEIAEVLSRATGIPVAKMMEGEKEKLL
RMEEELHKRVIGQNEAVEAVANAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKTLANFLFDSEDAMIRIDMSEFMEK
HSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVVLLDEVEKAHRDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNL
GSDLIQSQAGDLSYGEMKELVMSVVGQHFRPEFINRIDETVVFHPLAKENIRAIASIQLQRLINRMKERGYLLHFSEQAL
DYLGQVGYDPVYGARPLKRAIQNIVENPLAQQILSGALLPDKTIEINFVDGKLEAKQ

Nucleotide

• Length: 2574 bp

>NTDB_id=99303 ACKTSO_RS12340 WP_039150994.1 2543233..2545806(-) (clpC) [Gallibacterium anatis strain SMUHGa01]
ATGAATTTTGAAAAATTAACAACCAAATTCCAACAAGCATTGGCTGAAGCACAATCTTTAGCGTTAGGCAAAGATCAGCA
ATATATTGAGCCGGTGCATTTAATGAGCGCATTATTGAATCAAGAGGGTGGTTCCGTTGCGCCGTTGCTTACTGCTTCCG
GCGTTAATGTTGCTCAATTACGCCAAGCAATTAGCCAAGAGATCGATCGTTTACCTCAAGTTTCGGGTAACGGTGGTGAT
GTCCAGCTTTCGCCGGCATTAGCCAGAATGTTGAATTTATGTGATAAATTTGCGCAACAACGCAATGATAAATTTATCTC
ATCTGAACTTTTCGTATTAGCCGCTTTGGAAAGTTCCGACAAACTAAGTGATGTATTGAAGAAAAGCGGTTTAACCAGAC
AAAATTTATTAGCGAGTATTGATAAAATGCGTGGTGGCGAAAACGTCAATGATGCCGGTGCGGAAGAAACCCGTCAGGCA
TTACAAAAATATACTATTGATTTAACCGCAAGAGCAGAAAGCGGTAAATTGGATCCGGTTATCGGTCGTGATGATGAAAT
CCGCCGTACCATCCAAGTGTTGCAACGTCGTACCAAAAATAATCCGGTGTTAATCGGTGAACCGGGTGTGGGTAAAACGG
CTATCGTTGAAGGTTTGGCACAACGTATCGTTAACGGTGAAGTGCCGGAAGGATTACGACATAAACGTGTGCTTTCTTTG
GATATGGGAGCATTAATTGCCGGCGCGAAATACCGTGGGGAATTCGAAGAACGTTTAAAAGCGGTGTTAAATGAAATCGC
CAAAGAAGAAGGTCGAATTATCCTATTTATTGATGAAATTCACACAATGGTCGGTGCCGGTAAAACAGACGGCGCAATGG
ATGCCGGTAACTTATTGAAACCATCATTGGCACGCGGTGAATTACATTGTGTCGGTGCGACAACATTGGATGAATATCGT
CAATATATTGAAAAAGATGCCGCTTTGGAACGCCGTTTCCAAAAAGTGTTGGTTGATGAACCAAGCGTGGAAGATACCAT
CGCCATTTTGCGTGGTTTGAAAGAACGTTATGAAATTCACCACCACGTACAAATTACCGACCCGGCGATTGTAGCGGCAG
CAACACTTTCTCATCGTTATATCTCGGATCGTCAACTTCCGGATAAAGCGATTGACTTAATTGATGAAGCGGCTTCAAGC
ATTCGTATGGAAATCGATTCCAAACCGCAACCATTAGATAAATTGGAACGCCGTATTATTCAATTAAAACTTGAACAACA
AGCGTTACAAAAAGAAGAAGACGATGCCAGCCGTAAACGCCTTGAAATGTTAGAAAAAGAGTTGGCAGAAAAAGAGAAAG
AGTATTCTGAACTTGAAGAAGTTTGGAAGAGCGAAAAAGCAGCACTTTCCGGTGCACAACATATCAAAGCGGAATTGGAT
AATGCCAAAACTAAAATGGAACAGGCTTATCGTGCCGGTGATATTGCGAAGATGTCTGAATTGAAATACAGCACCATTCC
GGCGTTGGAAAAACAATTAGAACAGGCTGAAAGTGCAGAAGGCAAGGAAATGAGCCTATTGCGTTACCGTGTTACCGACG
AAGAAATCGCTGAAGTGCTTTCTCGTGCTACCGGTATTCCTGTAGCTAAAATGATGGAAGGTGAAAAAGAAAAATTATTG
AGAATGGAAGAAGAGTTACACAAACGTGTTATCGGACAAAATGAAGCGGTTGAAGCAGTGGCAAACGCAATTCGTCGTAG
CCGTGCCGGATTATCCGATCCGAATCGTCCGATTGGTTCATTCTTATTCTTAGGACCAACTGGTGTTGGTAAAACCGAAT
TGTGTAAAACATTGGCAAATTTCCTATTCGACAGTGAAGATGCAATGATCAGAATCGATATGTCAGAATTTATGGAAAAA
CATTCTGTTTCTCGTTTGGTCGGTGCACCTCCGGGATATGTCGGTTATGAAGAAGGCGGTTACTTAACCGAAGCGGTTCG
TCGTCGTCCATATTCTGTCGTTTTACTTGATGAAGTGGAAAAAGCACACCGTGATGTTTTCAACATTTTATTGCAAGTGC
TTGATGACGGACGTTTAACTGATGGTCAGGGTCGTACGGTCGATTTCCGTAATACGGTAGTGATTATGACCTCCAACTTG
GGTTCTGATTTAATTCAATCTCAAGCCGGTGATCTTAGCTACGGTGAAATGAAGGAATTAGTGATGTCTGTGGTTGGACA
ACATTTCCGTCCGGAATTTATCAACCGTATTGACGAAACTGTGGTCTTCCACCCACTTGCCAAAGAAAACATTCGTGCGA
TTGCGTCAATTCAATTACAACGTTTGATCAATCGTATGAAAGAACGTGGTTACTTGTTGCATTTCAGCGAACAAGCATTG
GATTACTTAGGTCAAGTCGGTTACGACCCGGTTTACGGCGCAAGACCTTTAAAACGTGCAATCCAAAATATTGTGGAAAA
CCCACTTGCACAACAAATTTTGTCCGGCGCGCTATTACCGGATAAAACCATTGAAATCAACTTTGTTGATGGAAAATTAG
AAGCTAAACAATAA

Domains

Predicted by InterProScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (766-846)

• AAA lid domain (AAA_lid_9) (342-443)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (94-145)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (17-68)

• ATPase family associated with various cellular activities (AAA) (AAA) (203-334)

• AAA domain (Cdc48 subfamily) (AAA_2) (596-759)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	47.296	100	0.48
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	42.647	100	0.44
clpE	Streptococcus pneumoniae Rx1	48.824	79.347	0.387
clpE	Streptococcus pneumoniae D39	48.824	79.347	0.387
clpE	Streptococcus pneumoniae R6	48.824	79.347	0.387
clpE	Streptococcus pneumoniae TIGR4	48.824	79.347	0.387
clpE	Streptococcus mutans UA159	48.521	78.88	0.383
clpC	Lactococcus lactis subsp. cremoris KW2	47.254	80.747	0.382