Detailed information
Bioinformatically predicted
Overview
| Name | pilO | Type | Machinery gene |
| Locus tag | QMG95_RS17275 | Genome accession | NZ_AP027045 |
| Coordinates | 3736784..3737371 (-) | Length | 195 a.a. |
| NCBI ID | WP_004405328.1 | Uniprot ID | - |
| Organism | Vibrio nigripulchritudo strain TUMSAT-V.nig1 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3731784..3742371
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QMG95_RS17255 (TUMSATVNIG1_33640) | aroB | 3732678..3733766 (-) | 1089 | WP_004405321.1 | 3-dehydroquinate synthase | - |
| QMG95_RS17260 (TUMSATVNIG1_33650) | aroK | 3733789..3734307 (-) | 519 | WP_004405322.1 | shikimate kinase AroK | - |
| QMG95_RS17265 (TUMSATVNIG1_33660) | pilQ | 3734497..3736242 (-) | 1746 | WP_200766247.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| QMG95_RS17270 (TUMSATVNIG1_33670) | pilP | 3736279..3736791 (-) | 513 | WP_022593066.1 | pilus assembly protein PilP | Machinery gene |
| QMG95_RS17275 (TUMSATVNIG1_33680) | pilO | 3736784..3737371 (-) | 588 | WP_004405328.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| QMG95_RS17280 (TUMSATVNIG1_33690) | pilN | 3737368..3737928 (-) | 561 | WP_004405329.1 | PilN domain-containing protein | Machinery gene |
| QMG95_RS17285 (TUMSATVNIG1_33700) | pilM | 3737921..3738937 (-) | 1017 | WP_200766248.1 | type IV pilus assembly protein PilM | Machinery gene |
| QMG95_RS17290 (TUMSATVNIG1_33710) | - | 3739083..3741581 (+) | 2499 | WP_200766249.1 | PBP1A family penicillin-binding protein | - |
Sequence
Protein
Download Length: 195 a.a. Molecular weight: 22736.13 Da Isoelectric Point: 4.6739
>NTDB_id=99301 QMG95_RS17275 WP_004405328.1 3736784..3737371(-) (pilO) [Vibrio nigripulchritudo strain TUMSAT-V.nig1]
MIDWQELDFEDLPEWPLVAQILVLALLFLILQGVGSWFYLSPMKADLEQLKQKEQTLKSTLIIKTNKVAALPKLQEQLDE
LNSRYDYLLKQLPEQKELASMLASVNELGIQHGLTFTRIDWGKKQNQEFLYRLPLNIELTGTYENIGKFSAAIANLPRII
NFDDVDWQRVSQESSTLHFRVRAYTYQFKPEVTDE
MIDWQELDFEDLPEWPLVAQILVLALLFLILQGVGSWFYLSPMKADLEQLKQKEQTLKSTLIIKTNKVAALPKLQEQLDE
LNSRYDYLLKQLPEQKELASMLASVNELGIQHGLTFTRIDWGKKQNQEFLYRLPLNIELTGTYENIGKFSAAIANLPRII
NFDDVDWQRVSQESSTLHFRVRAYTYQFKPEVTDE
Nucleotide
Download Length: 588 bp
>NTDB_id=99301 QMG95_RS17275 WP_004405328.1 3736784..3737371(-) (pilO) [Vibrio nigripulchritudo strain TUMSAT-V.nig1]
ATGATCGATTGGCAAGAACTTGATTTCGAAGATTTACCGGAATGGCCGCTTGTTGCACAGATTTTAGTGCTGGCGCTCTT
GTTTCTGATTCTTCAAGGGGTGGGTAGCTGGTTTTATCTCTCTCCCATGAAAGCGGATCTTGAGCAGCTTAAGCAGAAAG
AGCAGACACTCAAAAGCACCTTGATTATCAAAACCAATAAGGTAGCGGCACTGCCAAAATTGCAGGAGCAGCTGGATGAA
CTCAATAGCCGTTATGACTATCTGTTAAAACAGCTTCCTGAACAGAAAGAGTTGGCAAGCATGCTGGCTTCTGTAAACGA
GCTGGGTATTCAGCACGGTTTGACTTTTACCCGTATCGATTGGGGTAAGAAGCAGAATCAGGAGTTTCTTTATCGTCTGC
CTCTGAATATTGAACTCACCGGAACTTACGAAAACATTGGTAAGTTCTCAGCGGCCATTGCCAACCTACCGCGGATCATA
AACTTCGACGATGTCGACTGGCAGCGGGTCAGTCAGGAAAGCAGCACCCTTCACTTCAGGGTAAGGGCGTACACCTATCA
GTTCAAACCGGAGGTGACCGATGAATAA
ATGATCGATTGGCAAGAACTTGATTTCGAAGATTTACCGGAATGGCCGCTTGTTGCACAGATTTTAGTGCTGGCGCTCTT
GTTTCTGATTCTTCAAGGGGTGGGTAGCTGGTTTTATCTCTCTCCCATGAAAGCGGATCTTGAGCAGCTTAAGCAGAAAG
AGCAGACACTCAAAAGCACCTTGATTATCAAAACCAATAAGGTAGCGGCACTGCCAAAATTGCAGGAGCAGCTGGATGAA
CTCAATAGCCGTTATGACTATCTGTTAAAACAGCTTCCTGAACAGAAAGAGTTGGCAAGCATGCTGGCTTCTGTAAACGA
GCTGGGTATTCAGCACGGTTTGACTTTTACCCGTATCGATTGGGGTAAGAAGCAGAATCAGGAGTTTCTTTATCGTCTGC
CTCTGAATATTGAACTCACCGGAACTTACGAAAACATTGGTAAGTTCTCAGCGGCCATTGCCAACCTACCGCGGATCATA
AACTTCGACGATGTCGACTGGCAGCGGGTCAGTCAGGAAAGCAGCACCCTTCACTTCAGGGTAAGGGCGTACACCTATCA
GTTCAAACCGGAGGTGACCGATGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilO | Vibrio cholerae strain A1552 |
68.718 |
100 |
0.687 |
| pilO | Vibrio campbellii strain DS40M4 |
66.316 |
97.436 |
0.646 |