Detailed information NTG0992792

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AAIA70_RS13490
• Genome accession: NZ_CP154264
• Coordinates: 2939338..2940207 (+)
• Length: 289 a.a.
• NCBI ID: WP_045488712.1
• Uniprot ID: A0A9X3MI55
• Organism: Vibrio harveyi strain 45T2
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2934338..2945207

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAIA70_RS13470 (AAIA70_13470)	nadC	2934707..2935594 (+)	888	WP_343290998.1	carboxylating nicotinate-nucleotide diphosphorylase	-
AAIA70_RS13475 (AAIA70_13475)	pilA	2935859..2936317 (+)	459	WP_017189133.1	pilin	Machinery gene
AAIA70_RS13480 (AAIA70_13480)	pilB	2936323..2938008 (+)	1686	WP_343290999.1	type IV-A pilus assembly ATPase PilB	Machinery gene
AAIA70_RS13485 (AAIA70_13485)	pilC	2938042..2939265 (+)	1224	WP_005446256.1	type II secretion system F family protein	Machinery gene
AAIA70_RS13490 (AAIA70_13490)	pilD	2939338..2940207 (+)	870	WP_045488712.1	A24 family peptidase	Machinery gene
AAIA70_RS13495 (AAIA70_13495)	coaE	2940208..2940822 (+)	615	WP_343291000.1	dephospho-CoA kinase	-
AAIA70_RS13500 (AAIA70_13500)	zapD	2940850..2941590 (+)	741	WP_343291001.1	cell division protein ZapD	-
AAIA70_RS13505 (AAIA70_13505)	yacG	2941647..2941847 (+)	201	WP_343291002.1	DNA gyrase inhibitor YacG	-
AAIA70_RS13510 (AAIA70_13510)	rplS	2942214..2942567 (-)	354	WP_005379971.1	50S ribosomal protein L19	-
AAIA70_RS13515 (AAIA70_13515)	trmD	2942609..2943352 (-)	744	WP_005446247.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
AAIA70_RS13520 (AAIA70_13520)	rimM	2943380..2943928 (-)	549	WP_005446245.1	ribosome maturation factor RimM	-
AAIA70_RS13525 (AAIA70_13525)	rpsP	2943957..2944205 (-)	249	WP_004410028.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32576.76 Da
• Isoelectric Point: 7.5715

>NTDB_id=992792 AAIA70_RS13490 WP_045488712.1 2939338..2940207(+) (pilD) [Vibrio harveyi strain 45T2]
MEVFQYYPWLFVVFTAIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIEPPKETLTLSVPRSSCQQCGTHIRIR
DNIPVISWLLLKGKCHNCQSPISARYPLIELLTAFCSGFIAFHFGFSYFTVALVFFTFVLIAATFIDLDTMLLPDQLTLP
LMWAGIALALAGISHVSLQDSIIGAMAGYLCLWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLIQLRLQKQGIEKAFPFGPYLAIAGWVSLIWGNQILNWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=992792 AAIA70_RS13490 WP_045488712.1 2939338..2940207(+) (pilD) [Vibrio harveyi strain 45T2]
ATGGAAGTATTCCAGTACTACCCATGGCTATTCGTTGTATTTACCGCTATTTTTGGTTTGATCGTGGGTAGTTTCCTCAA
CGTAGTTATTTACCGTTTACCTAAGATCATGGAACTAGAATGGCGACGCGAGTGCGCTGAATCATTCCCTGAATACAAGA
TCGAGCCACCAAAAGAGACATTAACCTTAAGCGTGCCACGTTCATCTTGTCAGCAATGCGGTACACATATCCGCATTAGA
GACAATATCCCTGTGATTAGTTGGCTATTACTAAAAGGTAAATGCCACAACTGCCAATCACCTATCAGTGCCCGTTACCC
TCTTATCGAACTGCTTACCGCTTTTTGTTCGGGTTTTATCGCTTTTCATTTCGGTTTTAGCTACTTCACTGTGGCGCTGG
TTTTCTTTACCTTTGTATTGATTGCTGCCACATTTATCGACCTTGATACCATGTTGCTGCCAGACCAACTCACACTGCCA
TTGATGTGGGCGGGTATTGCTCTTGCTCTTGCCGGTATCAGCCATGTAAGTCTTCAAGATTCTATTATTGGAGCAATGGC
AGGCTACTTATGTCTTTGGAGTGTTTATTGGTTATTCAAACTCCTCACAGGCAAAGAGGGAATGGGCTATGGCGACTTTA
AACTCCTTGCTGCATTAGGAGCTTGGTTGGGCTGGCAATCTCTGCCGATGATCATTTTGCTTTCTTCGGTAGTAGGCGTC
ATTTTTGGTCTTATCCAACTGCGCTTGCAAAAGCAAGGTATCGAAAAAGCCTTTCCTTTTGGTCCTTACCTTGCAATTGC
AGGATGGGTGAGCCTAATTTGGGGCAATCAAATCCTCAACTGGTACTTTACGTCGATTCTAGGAGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	96.886	100	0.969
pilD	Vibrio cholerae strain A1552	73.958	99.654	0.737
pilD	Acinetobacter baumannii D1279779	52.768	93.772	0.495
pilD	Acinetobacter nosocomialis M2	52.399	93.772	0.491
pilD	Neisseria gonorrhoeae MS11	45.652	95.502	0.436