Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   QMG46_RS00610 Genome accession   NZ_AP027042
Coordinates   135833..136891 (-) Length   352 a.a.
NCBI ID   WP_281850482.1    Uniprot ID   -
Organism   Dyella sp. GSA-30     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 130833..141891
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMG46_RS00590 (DYGSA30_01180) - 131664..133814 (-) 2151 WP_281850478.1 type IV pilus secretin PilQ -
  QMG46_RS00595 (DYGSA30_01190) - 133871..134404 (-) 534 WP_281850479.1 pilus assembly protein PilP -
  QMG46_RS00600 (DYGSA30_01200) pilO 134401..135105 (-) 705 WP_281850480.1 type 4a pilus biogenesis protein PilO -
  QMG46_RS00605 (DYGSA30_01210) - 135102..135833 (-) 732 WP_281850481.1 PilN domain-containing protein -
  QMG46_RS00610 (DYGSA30_01220) pilM 135833..136891 (-) 1059 WP_281850482.1 pilus assembly protein PilM Machinery gene
  QMG46_RS00615 (DYGSA30_01230) - 137138..139657 (+) 2520 WP_281850483.1 penicillin-binding protein 1A -
  QMG46_RS00620 (DYGSA30_01240) - 139784..140461 (+) 678 WP_281850484.1 hypothetical protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37951.47 Da        Isoelectric Point: 4.5656

>NTDB_id=99241 QMG46_RS00610 WP_281850482.1 135833..136891(-) (pilM) [Dyella sp. GSA-30]
MGLFTPKKPPLIGVDISSTAVKLLQLSQAGNRYRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRALARSGSKLKHASAA
VAGSAVITRIIPMSSELSDDDLEGQIQVEANQYIPYPIDEVSLDFEVLGPVRDNPEMNNVLLAASRTENVDMRVAALDLG
GLSAKVIDVEAFAMENAFAMLADQLNVGRDALVAVVDIGATMTTLSVLRNQRTIYSREQVFGGKQLTDEIMRRYGLSYEE
AGRAKRKGGLPDSYESEALEPFKESLIQQISRLLQFFFAGSEYSKVDQVVLAGGCASIDGLGPMLEDQLGVSCIVANPLA
RMSLSPRVQAQSLAQDAPALMIAVGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=99241 QMG46_RS00610 WP_281850482.1 135833..136891(-) (pilM) [Dyella sp. GSA-30]
GTGGGGCTCTTTACACCCAAGAAGCCGCCGCTTATTGGCGTCGACATCAGTTCGACCGCCGTTAAGCTGCTGCAGCTAAG
TCAGGCCGGTAACCGCTATCGCGTGGAACATTACGCGGTCGAGCCGTTGCCCCCCAATGCCGTGGTCGAAAAGAACATCG
TCGAGGTCGAGGCGGTGGGCGAAGCGATCCGCCGCGCGCTGGCGCGTTCCGGCTCCAAGCTCAAGCACGCTTCGGCGGCA
GTCGCGGGGTCAGCGGTCATCACCCGCATCATCCCGATGTCGAGCGAGTTGAGCGACGACGATCTGGAAGGCCAGATCCA
GGTCGAGGCCAACCAGTACATCCCGTATCCGATCGACGAAGTCAGCCTCGATTTCGAGGTGCTCGGTCCGGTACGCGACA
ACCCCGAAATGAATAACGTGCTGTTGGCCGCCTCGCGTACCGAGAACGTCGACATGCGCGTGGCCGCGTTGGATCTGGGC
GGCCTGTCCGCCAAGGTGATCGACGTCGAAGCTTTCGCGATGGAAAACGCCTTCGCGATGCTGGCCGACCAGCTCAATGT
CGGTCGCGATGCGCTGGTGGCCGTGGTCGATATCGGCGCCACCATGACCACGCTGTCGGTGCTGCGCAATCAGCGCACCA
TCTATTCGCGCGAACAGGTCTTCGGTGGCAAGCAGTTGACCGATGAAATCATGCGCCGCTACGGTCTTTCCTATGAGGAA
GCCGGCCGCGCCAAGCGCAAGGGCGGCCTGCCCGACTCGTACGAGAGCGAGGCGCTGGAGCCGTTCAAGGAGTCGCTGAT
CCAGCAGATCAGCCGCCTGCTGCAGTTCTTCTTTGCCGGCAGCGAATACAGCAAGGTCGATCAGGTCGTGTTGGCCGGCG
GCTGCGCTTCGATCGACGGCTTGGGTCCCATGCTCGAAGATCAACTGGGCGTGTCGTGCATCGTCGCCAATCCGCTTGCG
CGCATGTCGCTGTCGCCGCGCGTGCAGGCGCAGTCGCTGGCGCAGGATGCTCCGGCCCTGATGATCGCCGTCGGTCTCGC
GTTGAGGAGCTTTGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

54.094

97.159

0.526
  comM Acinetobacter nosocomialis M2

53.801

97.159

0.523
  comM Acinetobacter baylyi ADP1

51.429

99.432

0.511
  pilM Legionella pneumophila strain ERS1305867

43.343

100

0.435

Multiple sequence alignment