Detailed information
Bioinformatically predicted
Overview
| Name | ruvB | Type | Machinery gene |
| Locus tag | ACKTXI_RS31620 | Genome accession | NZ_AP035884 |
| Coordinates | 7060518..7061603 (+) | Length | 361 a.a. |
| NCBI ID | WP_030633286.1 | Uniprot ID | - |
| Organism | Streptomyces sp. CMC78 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 7055518..7066603
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACKTXI_RS31590 (SCMC78_63840) | - | 7056073..7056621 (+) | 549 | WP_030085915.1 | hypothetical protein | - |
| ACKTXI_RS31595 (SCMC78_63850) | pdxS | 7056779..7057699 (+) | 921 | WP_003970325.1 | pyridoxal 5'-phosphate synthase lyase subunit PdxS | - |
| ACKTXI_RS31600 (SCMC78_63860) | pdxT | 7057706..7058299 (+) | 594 | WP_086778118.1 | pyridoxal 5'-phosphate synthase glutaminase subunit PdxT | - |
| ACKTXI_RS31605 (SCMC78_63870) | - | 7058361..7059113 (+) | 753 | WP_030085918.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| ACKTXI_RS31610 (SCMC78_63880) | ruvC | 7059269..7059865 (+) | 597 | WP_030085919.1 | crossover junction endodeoxyribonuclease RuvC | - |
| ACKTXI_RS31615 (SCMC78_63890) | ruvA | 7059862..7060488 (+) | 627 | WP_030633289.1 | Holliday junction branch migration protein RuvA | - |
| ACKTXI_RS31620 (SCMC78_63900) | ruvB | 7060518..7061603 (+) | 1086 | WP_030633286.1 | Holliday junction branch migration DNA helicase RuvB | Machinery gene |
| ACKTXI_RS31625 (SCMC78_63910) | yajC | 7061770..7062261 (+) | 492 | WP_319600350.1 | preprotein translocase subunit YajC | - |
| ACKTXI_RS31630 (SCMC78_63920) | secD | 7062412..7064202 (+) | 1791 | WP_319600351.1 | protein translocase subunit SecD | - |
| ACKTXI_RS31635 (SCMC78_63930) | secF | 7064204..7065289 (+) | 1086 | WP_408054588.1 | protein translocase subunit SecF | - |
| ACKTXI_RS31640 (SCMC78_63940) | - | 7065293..7065844 (+) | 552 | WP_030085932.1 | adenine phosphoribosyltransferase | - |
Sequence
Protein
Download Length: 361 a.a. Molecular weight: 38650.15 Da Isoelectric Point: 4.7401
>NTDB_id=99241 ACKTXI_RS31620 WP_030633286.1 7060518..7061603(+) (ruvB) [Streptomyces sp. CMC78]
MNWDETGPETDEPTGPVLDDRLVDADADGEDTAVEAALRPKDLEEFVGQEKVREQLDLVLKAARARGATADHVLLSGAPG
LGKTTLSMIIAAEMNAPIRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEEMLYMAMEDFRVDVIVGKGPGA
TAIPLELPPFTLVGATTRAGLLPPPLRDRFGFTGHMEFYAPAELERVIHRSARLLDVEIDVEGAAEIAGRSRGTPRIANR
LLRRVRDYAQVKAEGAIDREIAAAALKVYEVDARGLDRLDRAVLGALLKLFGGGPVGLSTLAVAVGEERETVEEVAEPFL
VREGLLARTPRGRVATPAAWAHLGLVPPQHGAKGQQGLFGA
MNWDETGPETDEPTGPVLDDRLVDADADGEDTAVEAALRPKDLEEFVGQEKVREQLDLVLKAARARGATADHVLLSGAPG
LGKTTLSMIIAAEMNAPIRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEEMLYMAMEDFRVDVIVGKGPGA
TAIPLELPPFTLVGATTRAGLLPPPLRDRFGFTGHMEFYAPAELERVIHRSARLLDVEIDVEGAAEIAGRSRGTPRIANR
LLRRVRDYAQVKAEGAIDREIAAAALKVYEVDARGLDRLDRAVLGALLKLFGGGPVGLSTLAVAVGEERETVEEVAEPFL
VREGLLARTPRGRVATPAAWAHLGLVPPQHGAKGQQGLFGA
Nucleotide
Download Length: 1086 bp
>NTDB_id=99241 ACKTXI_RS31620 WP_030633286.1 7060518..7061603(+) (ruvB) [Streptomyces sp. CMC78]
ATGAACTGGGACGAGACCGGACCCGAGACCGACGAGCCCACCGGCCCGGTCCTCGACGACCGGCTGGTCGACGCCGACGC
GGACGGTGAGGACACCGCGGTCGAGGCGGCCCTGCGCCCCAAGGACCTGGAGGAGTTCGTCGGCCAGGAGAAGGTCCGCG
AACAGCTCGACCTGGTCCTCAAGGCCGCCCGCGCCCGCGGCGCCACCGCCGACCACGTGCTGCTCTCCGGCGCCCCCGGC
CTCGGCAAGACCACCCTCTCGATGATCATCGCCGCCGAGATGAACGCCCCGATCCGCATCACCTCGGGCCCCGCCATCCA
GCACGCCGGCGACCTCGCGGCGATCCTCTCCTCCCTCCAGGAGGGCGAGGTCCTCTTCCTCGACGAGATCCACCGCATGT
CCCGGCCCGCCGAGGAGATGCTCTACATGGCGATGGAGGACTTCCGCGTCGACGTCATCGTCGGCAAGGGCCCCGGCGCC
ACCGCGATCCCGCTGGAGCTGCCCCCCTTCACCCTGGTCGGGGCCACCACCCGGGCCGGACTGCTGCCGCCCCCGCTGCG
CGACCGCTTCGGCTTCACCGGGCACATGGAGTTCTACGCCCCCGCCGAGCTGGAGCGCGTCATCCACCGCTCCGCCCGCC
TCCTCGACGTCGAGATCGACGTGGAGGGCGCCGCCGAGATCGCCGGACGCTCCCGCGGCACTCCCCGTATCGCCAACCGG
CTGCTGCGCCGGGTCCGCGACTACGCCCAGGTCAAGGCGGAAGGAGCGATCGACCGGGAGATCGCCGCGGCCGCCCTCAA
GGTGTACGAGGTTGACGCCCGCGGACTCGATCGGCTGGACCGTGCCGTCCTCGGCGCGCTGCTGAAGCTCTTCGGCGGCG
GCCCGGTCGGCCTGTCCACCCTGGCGGTCGCCGTGGGGGAGGAGCGGGAGACCGTCGAGGAGGTCGCCGAGCCCTTCCTC
GTACGGGAAGGACTGCTGGCCAGGACGCCGCGCGGCCGGGTCGCGACCCCCGCTGCCTGGGCGCATCTGGGCCTGGTCCC
GCCGCAGCACGGAGCAAAGGGACAACAGGGTCTGTTCGGGGCGTGA
ATGAACTGGGACGAGACCGGACCCGAGACCGACGAGCCCACCGGCCCGGTCCTCGACGACCGGCTGGTCGACGCCGACGC
GGACGGTGAGGACACCGCGGTCGAGGCGGCCCTGCGCCCCAAGGACCTGGAGGAGTTCGTCGGCCAGGAGAAGGTCCGCG
AACAGCTCGACCTGGTCCTCAAGGCCGCCCGCGCCCGCGGCGCCACCGCCGACCACGTGCTGCTCTCCGGCGCCCCCGGC
CTCGGCAAGACCACCCTCTCGATGATCATCGCCGCCGAGATGAACGCCCCGATCCGCATCACCTCGGGCCCCGCCATCCA
GCACGCCGGCGACCTCGCGGCGATCCTCTCCTCCCTCCAGGAGGGCGAGGTCCTCTTCCTCGACGAGATCCACCGCATGT
CCCGGCCCGCCGAGGAGATGCTCTACATGGCGATGGAGGACTTCCGCGTCGACGTCATCGTCGGCAAGGGCCCCGGCGCC
ACCGCGATCCCGCTGGAGCTGCCCCCCTTCACCCTGGTCGGGGCCACCACCCGGGCCGGACTGCTGCCGCCCCCGCTGCG
CGACCGCTTCGGCTTCACCGGGCACATGGAGTTCTACGCCCCCGCCGAGCTGGAGCGCGTCATCCACCGCTCCGCCCGCC
TCCTCGACGTCGAGATCGACGTGGAGGGCGCCGCCGAGATCGCCGGACGCTCCCGCGGCACTCCCCGTATCGCCAACCGG
CTGCTGCGCCGGGTCCGCGACTACGCCCAGGTCAAGGCGGAAGGAGCGATCGACCGGGAGATCGCCGCGGCCGCCCTCAA
GGTGTACGAGGTTGACGCCCGCGGACTCGATCGGCTGGACCGTGCCGTCCTCGGCGCGCTGCTGAAGCTCTTCGGCGGCG
GCCCGGTCGGCCTGTCCACCCTGGCGGTCGCCGTGGGGGAGGAGCGGGAGACCGTCGAGGAGGTCGCCGAGCCCTTCCTC
GTACGGGAAGGACTGCTGGCCAGGACGCCGCGCGGCCGGGTCGCGACCCCCGCTGCCTGGGCGCATCTGGGCCTGGTCCC
GCCGCAGCACGGAGCAAAGGGACAACAGGGTCTGTTCGGGGCGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvB | Bacillus subtilis subsp. subtilis str. 168 |
52.853 |
92.244 |
0.488 |
| ruvB | Streptococcus pneumoniae TIGR4 |
53.086 |
89.751 |
0.476 |
| ruvB | Streptococcus pneumoniae R6 |
53.086 |
89.751 |
0.476 |
| ruvB | Streptococcus pneumoniae D39 |
53.086 |
89.751 |
0.476 |
| ruvB | Synechocystis sp. PCC 6803 |
53.503 |
86.981 |
0.465 |
| ruvB | Helicobacter pylori 26695 |
50.625 |
88.643 |
0.449 |