Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LA521A_RS14320 Genome accession   NZ_AP027041
Coordinates   3150727..3151224 (-) Length   165 a.a.
NCBI ID   WP_281779542.1    Uniprot ID   -
Organism   Lysobacter auxotrophicus strain 5-21a     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3145727..3156224
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LA521A_RS14300 (LA521A_28200) rfbD 3147290..3148174 (-) 885 WP_281779538.1 dTDP-4-dehydrorhamnose reductase -
  LA521A_RS14305 (LA521A_28210) rfbC 3148182..3148739 (-) 558 WP_281779539.1 dTDP-4-dehydrorhamnose 3,5-epimerase -
  LA521A_RS14310 (LA521A_28220) rfbA 3148736..3149620 (-) 885 WP_281779540.1 glucose-1-phosphate thymidylyltransferase RfbA -
  LA521A_RS14315 (LA521A_28230) rfbB 3149630..3150682 (-) 1053 WP_281779541.1 dTDP-glucose 4,6-dehydratase -
  LA521A_RS14320 (LA521A_28240) ssb 3150727..3151224 (-) 498 WP_281779542.1 single-stranded DNA-binding protein Machinery gene
  LA521A_RS14325 (LA521A_28250) - 3151364..3151678 (-) 315 WP_281779543.1 DUF5076 domain-containing protein -
  LA521A_RS14330 (LA521A_28260) - 3151678..3151965 (-) 288 WP_281779544.1 hypothetical protein -
  LA521A_RS14335 (LA521A_28270) - 3152113..3153129 (+) 1017 WP_281779545.1 polyprenyl synthetase family protein -
  LA521A_RS14340 (LA521A_28280) murD 3153154..3154578 (-) 1425 WP_281779546.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -
  LA521A_RS14345 (LA521A_28290) murL 3154559..3155920 (-) 1362 WP_281779547.1 UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-L- glutamate epimerase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18046.82 Da        Isoelectric Point: 5.9967

>NTDB_id=99235 LA521A_RS14320 WP_281779542.1 3150727..3151224(-) (ssb) [Lysobacter auxotrophicus strain 5-21a]
MARGINKVILVGNLGDDPETKYTQGGMAVTKARLATTSVRKDRDGNTQERTEWHRVTFFGKLGEIAGEYLRKGSQVYVEG
SIRYDKYTGQDGVERYSTDIIADEMQMLGGRPGEGGGSRSEYRGGGGGERSSRAPARQESAPRREAPPAKSSSFNDDFAD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=99235 LA521A_RS14320 WP_281779542.1 3150727..3151224(-) (ssb) [Lysobacter auxotrophicus strain 5-21a]
ATGGCACGCGGCATCAACAAGGTGATCCTGGTCGGCAATCTTGGCGACGATCCCGAAACCAAGTACACCCAGGGCGGCAT
GGCCGTGACCAAGGCCCGCCTGGCGACGACGAGCGTGCGCAAGGACCGCGACGGCAACACCCAGGAGCGCACCGAGTGGC
ACCGAGTGACCTTCTTCGGCAAGCTTGGCGAGATCGCCGGCGAGTACCTGCGCAAGGGCAGCCAGGTATACGTCGAAGGC
TCGATCCGCTACGACAAGTACACCGGCCAGGACGGCGTGGAGCGCTACTCCACCGACATCATCGCCGACGAGATGCAGAT
GCTCGGCGGCCGTCCGGGCGAGGGCGGCGGCAGCCGCAGCGAATACCGCGGCGGTGGCGGCGGCGAGCGTTCGTCGCGTG
CGCCGGCGCGCCAGGAATCCGCACCGCGTCGTGAGGCGCCTCCGGCCAAGTCGAGCAGCTTCAACGACGATTTCGCGGAC
GACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

45.81

100

0.497
  ssb Neisseria meningitidis MC58

44.828

100

0.473
  ssb Neisseria gonorrhoeae MS11

44.253

100

0.467
  ssb Glaesserella parasuis strain SC1401

39.572

100

0.448

Multiple sequence alignment