NTDB

Overview

Name	ysxA/radC	Type	Machinery gene
Locus tag	SABB155_RS08295	Genome accession	NZ_LN854556
Coordinates	1684267..1684953 (-)	Length	228 a.a.
NCBI ID	WP_054190082.1	Uniprot ID	-
Organism	Staphylococcus aureus strain BB155
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1679267..1689953

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SABB155_RS08250 (SABB155_15430)	rpmA	1680039..1680323 (-)	285	WP_000916187.1	50S ribosomal protein L27	-
SABB155_RS08255 (SABB155_15440)	-	1680335..1680655 (-)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
SABB155_RS08260 (SABB155_15450)	rplU	1680661..1680969 (-)	309	WP_000457386.1	50S ribosomal protein L21	-
SABB155_RS08265 (SABB155_15460)	mreD	1681205..1681735 (-)	531	WP_054190078.1	rod shape-determining protein MreD	-
SABB155_RS08270 (SABB155_15470)	mreC	1681735..1682577 (-)	843	WP_054190079.1	rod shape-determining protein MreC	-
SABB155_RS08275	-	1682775..1682894 (-)	120	WP_054190080.1	hypothetical protein	-
SABB155_RS08280 (SABB155_15480)	-	1682968..1683441 (-)	474	WP_054190081.1	DUF4930 family protein	-
SABB155_RS08285 (SABB155_15490)	-	1683601..1683798 (+)	198	WP_000025835.1	hypothetical protein	-
SABB155_RS08290 (SABB155_15500)	-	1683915..1684199 (-)	285	WP_000171859.1	hypothetical protein	-
SABB155_RS08295 (SABB155_15510)	ysxA/radC	1684267..1684953 (-)	687	WP_054190082.1	RadC family protein	Machinery gene
SABB155_RS08300 (SABB155_15520)	-	1684950..1685657 (-)	708	WP_054190083.1	prepilin peptidase	-
SABB155_RS08310 (SABB155_15530)	-	1685924..1687195 (-)	1272	WP_054190085.1	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	-
SABB155_RS08315 (SABB155_15540)	-	1687208..1689838 (-)	2631	WP_054190086.1	valine--tRNA ligase	-

Sequence

Protein

Download Length: 228 a.a. Molecular weight: 25265.16 Da Isoelectric Point: 6.4966

                                >NTDB_id=992103 SABB155_RS08295 WP_054190082.1 1684267..1684953(-) (ysxA/radC) [Staphylococcus aureus strain BB155]

MKIKEMVTSEMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLIQVKGIGLQKAI

TLKAAFELGERMGRRAENNPIKITQPSDVADYMIPTMKDLTQEHFVILLLNSKNVVIKENCVFKGTLNSSIVHPREIFSI

AVRENANAIIAVHNHPSGDVTPSQEDIITTMRLKECGLILGIDLLDHIIIGDNRFTSLVEAGYFDEND

Nucleotide

Download Length: 687 bp

                                >NTDB_id=992103 SABB155_RS08295 WP_054190082.1 1684267..1684953(-) (ysxA/radC) [Staphylococcus aureus strain BB155]

TTGAAAATTAAAGAAATGGTAACTTCAGAAATGCCAAGAGAACGTTTGTTAAGCCATGGTGCAAAAAGTCTTTCGAATAC

AGAATTATTAGCTATATTGATTAACACCGGAAGAAAAGGATTCTCGAGTATTGACATTAGTAATGAACTGCTTAAATCTG

CTTCGAATCTGAATGAACTGAAAAAATCTTCAATTAACGATTTGATACAAGTTAAAGGGATTGGATTACAAAAAGCAATT

ACTTTAAAAGCAGCATTTGAGTTAGGGGAAAGGATGGGGAGGAGAGCTGAAAATAACCCTATAAAAATAACGCAACCAAG

TGATGTTGCTGATTATATGATTCCAACAATGAAAGATTTAACACAAGAACATTTTGTCATTTTATTGTTGAATTCAAAAA

ATGTAGTGATTAAAGAAAACTGTGTTTTTAAAGGTACATTAAATAGTTCGATTGTACATCCACGTGAAATTTTTAGTATT

GCGGTGAGAGAAAATGCCAATGCAATCATCGCAGTTCATAATCATCCATCCGGTGATGTAACGCCCTCACAAGAAGATAT

CATAACAACAATGAGGTTGAAGGAGTGTGGTTTGATTTTAGGGATAGATTTATTGGATCATATTATAATCGGTGATAATA

GATTTACCAGTCTTGTAGAAGCGGGTTACTTTGATGAAAATGATTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-222)

UPF0758 N-terminal (UPF0758_N)

(3-80)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	52.679	98.246	0.518
radC	Streptococcus pneumoniae TIGR4	41.038	92.982	0.382
radC	Streptococcus gordonii str. Challis substr. CH1	39.908	95.614	0.382
radC	Streptococcus pneumoniae R6	40.566	92.982	0.377
radC	Streptococcus pneumoniae D39	40.566	92.982	0.377

Detailed information NTG0992103