Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACKTXI_RS08060 Genome accession   NZ_AP035884
Coordinates   1835172..1836794 (-) Length   540 a.a.
NCBI ID   WP_397704821.1    Uniprot ID   -
Organism   Streptomyces sp. CMC78     
Function   promote branch migration; interact with DprA; integration of tDNA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1830172..1841794
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKTXI_RS08040 (SCMC78_16540) - 1831185..1831994 (+) 810 WP_408053528.1 peptidoglycan DD-metalloendopeptidase family protein -
  ACKTXI_RS08045 (SCMC78_16550) - 1831933..1832502 (-) 570 WP_408054861.1 TetR/AcrR family transcriptional regulator -
  ACKTXI_RS08050 (SCMC78_16560) whiG 1832630..1833466 (-) 837 WP_319601805.1 RNA polymerase sigma factor WhiG -
  ACKTXI_RS08055 (SCMC78_16570) dprA 1833721..1834833 (-) 1113 WP_397725428.1 DNA-processing protein DprA -
  ACKTXI_RS08060 (SCMC78_16580) comM 1835172..1836794 (-) 1623 WP_397704821.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACKTXI_RS08065 (SCMC78_16590) - 1836794..1837153 (-) 360 WP_319598591.1 YraN family protein -
  ACKTXI_RS08070 (SCMC78_16600) - 1837315..1837623 (-) 309 WP_003965949.1 DUF2469 domain-containing protein -
  ACKTXI_RS08075 (SCMC78_16610) - 1837688..1838176 (-) 489 WP_319598590.1 NUDIX hydrolase -
  ACKTXI_RS08080 (SCMC78_16620) lepB 1838173..1838928 (-) 756 WP_319598589.1 signal peptidase I -
  ACKTXI_RS08085 (SCMC78_16630) lepB 1838978..1839892 (-) 915 WP_030085066.1 signal peptidase I -
  ACKTXI_RS08090 (SCMC78_16640) lepB 1839792..1840871 (-) 1080 WP_405929471.1 signal peptidase I -
  ACKTXI_RS08095 (SCMC78_16650) lepB 1840864..1841634 (-) 771 WP_408053529.1 signal peptidase I -

Sequence

Protein


Download         Length: 540 a.a.        Molecular weight: 55551.78 Da        Isoelectric Point: 6.6599

>NTDB_id=99185 ACKTXI_RS08060 WP_397704821.1 1835172..1836794(-) (comM) [Streptomyces sp. CMC78]
MGFARACSVALVGVEGVVVEVQADLEPGVAAFTLVGLPDKSLVESRDRVRAAVVNSGAEWPQKKLTVGLSPASVPKSGSG
FDLAVASAVLGAAERIDPAAIADVVMIGELGLDGRVRPVRGVLPAVLAAAEAGYEQVVVPEQSAGEAALVPGISVLGVRS
LRQLIAVLCDEPVPEEPADGQGRPDAMLAGLMIPGTGLGAGLAPAAARGDGHRPDLADVAGQPRPRRALEVAAAGGHHLL
FSGPPGAGKTMLAERLSAVLPPLTRQESLEVTAVHSVAGILPPGEPLVSRAPYCAPHHSATMQSLVGGGNGIPRPGAVSL
AHRGVLFLDEAPEFSGKALDALRQPLESGHVVVARAAGVVRLPARFLMVLAANPCPCGRHTLTGAGCECPPSVVRRYQAR
LSGPLLDRVDLRVEVEPVDRADLLGQGGRGESTAVVAARVRDARARAAERLAGTPWTTNSEVPGHELRTRLLAAPGALAA
AERDLERGILTARGLDRVLRVAWTVADLRGADRPDDSDVAVALELRTGIQRGVPMGAGER

Nucleotide


Download         Length: 1623 bp        

>NTDB_id=99185 ACKTXI_RS08060 WP_397704821.1 1835172..1836794(-) (comM) [Streptomyces sp. CMC78]
ATGGGCTTCGCACGAGCGTGTTCCGTGGCGCTGGTCGGCGTCGAGGGTGTGGTGGTGGAGGTCCAGGCGGACCTGGAGCC
GGGGGTGGCGGCCTTCACCCTGGTCGGGCTGCCGGACAAGAGCCTGGTGGAGAGCCGGGACCGGGTGCGGGCCGCGGTGG
TCAACTCCGGGGCCGAGTGGCCGCAGAAGAAGCTCACGGTCGGGCTCTCGCCGGCCTCCGTGCCGAAGAGCGGCTCGGGC
TTCGATCTCGCCGTCGCGAGCGCGGTCCTCGGTGCGGCGGAGCGGATCGACCCCGCGGCGATCGCCGATGTGGTGATGAT
CGGCGAACTGGGTCTGGACGGCCGGGTCCGTCCGGTCCGGGGCGTGCTGCCCGCCGTCCTGGCGGCGGCCGAAGCGGGGT
ACGAGCAGGTCGTCGTTCCCGAGCAGTCGGCCGGGGAGGCGGCGCTGGTGCCGGGGATCTCGGTCCTCGGGGTCCGGAGC
CTGCGCCAGCTCATCGCGGTTCTGTGCGACGAACCGGTGCCCGAGGAACCCGCGGACGGCCAGGGGCGCCCCGACGCCAT
GCTGGCCGGGCTCATGATCCCCGGCACGGGCCTCGGCGCGGGGCTCGCCCCGGCCGCCGCGCGCGGTGACGGCCACCGGC
CGGACCTGGCGGACGTCGCGGGGCAGCCGCGCCCGCGCCGGGCCCTGGAGGTGGCCGCGGCCGGCGGACACCATCTGCTC
TTCTCGGGCCCGCCGGGCGCGGGCAAGACCATGCTGGCCGAGCGGTTGTCGGCGGTCCTGCCGCCGTTGACCCGGCAGGA
ATCCCTCGAAGTGACGGCGGTCCACTCCGTGGCGGGCATCCTCCCCCCGGGTGAACCGCTCGTCTCCAGAGCGCCCTACT
GCGCTCCGCACCACTCGGCGACCATGCAGTCCCTGGTCGGCGGCGGCAACGGCATCCCGAGGCCCGGGGCGGTGTCCCTG
GCCCATCGCGGGGTCCTCTTCCTCGACGAGGCCCCGGAATTCTCGGGCAAGGCCCTGGACGCGCTGCGCCAGCCCCTGGA
GTCCGGTCATGTGGTGGTCGCGCGGGCGGCGGGCGTGGTGCGGCTGCCCGCCCGGTTCCTGATGGTGCTGGCCGCCAATC
CGTGCCCCTGCGGCCGGCACACGCTCACCGGCGCGGGCTGCGAATGCCCGCCCTCGGTGGTCCGCCGCTACCAGGCGCGC
CTGTCCGGGCCGCTGCTCGACCGGGTGGACCTGCGGGTCGAGGTGGAGCCGGTCGACCGCGCGGACCTGCTGGGGCAGGG
CGGCCGGGGCGAGTCGACGGCCGTCGTCGCCGCTCGGGTACGGGACGCCAGGGCGCGGGCGGCCGAGCGGCTGGCCGGCA
CCCCGTGGACCACGAACAGCGAGGTGCCCGGCCACGAGCTGCGGACCCGGCTGCTCGCGGCCCCGGGAGCGCTGGCGGCG
GCGGAGCGGGACCTGGAGCGCGGCATCCTCACGGCCCGGGGCCTGGACCGGGTGCTGAGGGTGGCCTGGACCGTGGCGGA
CCTGCGGGGTGCGGACCGCCCGGACGACTCCGATGTGGCGGTCGCCCTGGAACTGCGGACGGGCATCCAGCGCGGGGTGC
CGATGGGGGCGGGGGAGCGGTGA

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(430-526)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(215-421)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae O1 biovar El Tor strain E7946

41.992

94.815

0.398
  comM Vibrio cholerae strain A1552

41.992

94.815

0.398
  comM Vibrio campbellii strain DS40M4

40.494

97.407

0.394
  comM Acinetobacter baylyi ADP1

39.474

98.519

0.389
  comM Haemophilus influenzae Rd KW20

38.973

97.407

0.38
  comM Glaesserella parasuis strain SC1401

37.899

98.704

0.374