Detailed information    

insolico Bioinformatically predicted

Overview

Name   comW   Type   Regulator
Locus tag   AT689_RS02540 Genome accession   NZ_LN831051
Coordinates   474769..475005 (-) Length   78 a.a.
NCBI ID   WP_000939546.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain NCTC7465     
Function   stabilization and activation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 469769..480005
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AT689_RS02510 (ERS445053_00502) - 469958..470191 (+) 234 WP_000156422.1 hypothetical protein -
  AT689_RS02515 (ERS445053_00503) - 470191..470454 (+) 264 WP_000285962.1 type II toxin-antitoxin system RelE/ParE family toxin -
  AT689_RS12370 - 470467..470847 (+) 381 Protein_508 ImmA/IrrE family metallo-endopeptidase -
  AT689_RS02525 (ERS445053_00505) - 470885..471697 (+) 813 WP_001174227.1 HIRAN domain-containing protein -
  AT689_RS02530 (ERS445053_00506) - 471872..473020 (+) 1149 WP_000876726.1 site-specific integrase -
  AT689_RS02535 (ERS445053_00507) - 473252..474538 (-) 1287 WP_000205044.1 adenylosuccinate synthase -
  AT689_RS02540 (ERS445053_00508) comW 474769..475005 (-) 237 WP_000939546.1 sigma(X)-activator ComW Regulator
  AT689_RS11410 - 475270..476067 (+) 798 Protein_513 transposase -
  AT689_RS11415 - 476102..476948 (-) 847 Protein_514 IS630 family transposase -

Sequence

Protein


Download         Length: 78 a.a.        Molecular weight: 9686.14 Da        Isoelectric Point: 6.7051

>NTDB_id=991740 AT689_RS02540 WP_000939546.1 474769..475005(-) (comW) [Streptococcus pneumoniae strain NCTC7465]
MLQKIYEQMANFYDSIEEEYGPTFGDNFDWEHVHFKFLIYYLVRYGIGCRRDFIVYHYRVAYRLYLEKLVMNRGFISC

Nucleotide


Download         Length: 237 bp        

>NTDB_id=991740 AT689_RS02540 WP_000939546.1 474769..475005(-) (comW) [Streptococcus pneumoniae strain NCTC7465]
ATGTTACAAAAAATTTATGAGCAGATGGCTAATTTCTATGATAGTATTGAAGAAGAGTATGGTCCTACATTTGGTGATAA
TTTTGACTGGGAACATGTTCATTTTAAATTTTTAATTTATTATTTAGTGAGATATGGCATTGGTTGTCGTAGGGATTTTA
TCGTTTACCATTATCGTGTTGCTTATCGTTTGTATCTTGAAAAATTGGTAATGAATCGGGGTTTTATTTCTTGTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comW Streptococcus pneumoniae Rx1

98.718

100

0.987
  comW Streptococcus pneumoniae D39

98.718

100

0.987
  comW Streptococcus pneumoniae R6

98.718

100

0.987
  comW Streptococcus pneumoniae TIGR4

98.718

100

0.987
  comW Streptococcus mitis SK321

76.923

100

0.769
  comW Streptococcus mitis NCTC 12261

76.623

98.718

0.756